YRC Public Data Repository - Protein Structure Prediction

Protein:	PDE6D_BOVIN
Organism:	Bos taurus
Length:	150 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PDE6D_BOVIN.

Description	E-value	Query Range	Subject Range
gi\|50752331 - gi\|50752331\|ref\|XP_422739.1\| PREDICTED: similar to rod phosphodiesterase delta subunit [Gallus gallu...	253.0	[0..1]	[150..102]
PDE6D_MOUSE - Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta OS=Mus musculus GN...	240.0	[0..1]	[150..1]
PDE6D_CANLF - Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta OS=Canis lupus fam...	239.0	[0..1]	[150..1]
gi\|21465907 - gi\|21465907\|pdb\|1KSG\|B Chain B, Complex Of Arl2 And Pde Delta, Crystal Form 1	238.0	[0..1]	[150..3]
gi\|149016351, gi... - gi\|34877551\|ref\|XP_343614.1\| PREDICTED: similar to Retinal rod rhodopsin-sensitive cGMP 3,5-cyclic p...	237.0	[0..1]	[150..1]
gi\|182891388, gi... - gi\|94536711\|ref\|NP_001035484.1\| unc-119 homolog 2 isoform 1 [Danio rerio], gi\|92097691\|gb\|AAI15148.1...	236.0	[0..7]	[149..104]
gi\|109101433 - gi\|109101433\|ref\|XP_001113642.1\| PREDICTED: similar to phosphodiesterase 6D, cGMP-specific, rod, del...	235.0	[0..1]	[150..1]

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Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAKDERARE ILRGFKLNWM NLRDAETGKI LWQGTEDLSV PGVEHEARVP KKILKCKAVS  60
   61 RELNFSSAEQ MEKFRLEQKV YFKGQCLEEW FFEFGFVIPN STNTWQSLIE AAPESQMMPA 120
  121 SVLTGNVIIE TKFFDDDLLV STSRVRLFYV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.30103
Match:	1ksgB
Description:	GMP-PDE delta
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits