YRC Public Data Repository - Protein Structure Prediction

Protein:	CPLX2_NARJA
Organism:	Narke japonica
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CPLX2_NARJA.

Description	E-value	Query Range	Subject Range
gi\|15928669, gi\|... - gi\|31542416\|ref\|NP_031782.2\| complexin 1 [Mus musculus], gi\|15928669\|gb\|AAH14803.1\| Complexin 1 [Mus...	144.0	[0..1]	[134..1]
CPLX1_RAT - Complexin-1 OS=Rattus norvegicus GN=Cplx1 PE=1 SV=1 CPLX1_MOUSE - Complexin-1 OS=Mus musculus GN=Cplx1 PE=1 SV=1	143.0	[0..1]	[134..1]
gi\|30584359, gi\|... - gi\|61372290\|gb\|AAX43818.1\| complexin 1 [synthetic construct], gi\|61372285\|gb\|AAX43817.1\| complexin 1...	142.0	[0..1]	[134..1]
gi\|55926107, gi\|... - gi\|55926107\|ref\|NP_001007496.1\| cplx2 protein [Xenopus (Silurana) tropicalis], gi\|51258162\|gb\|AAH799...	141.0	[0..1]	[134..1]
gi\|363738978\|ref... - PREDICTED: complexin-2-like [Gallus gallus] CPLX2 - complexin 2 tr\|M3WND1\|M3WND1... - Complexin 2 OS=Felis catus GN=CPLX2 PE=4 SV=1 gi\|109079818 - gi\|109079818\|ref\|XP_001083046.1\| PREDICTED: complexin 2 [Macaca mulatta] gi\|73954019 - gi\|73954019\|ref\|XP_546223.2\| PREDICTED: similar to complexin 2 [Canis familiaris] gi\|197128165 - gi\|197128165\|gb\|ACH44663.1\| putative complexin 2 variant [Taeniopygia guttata] CPLX2_MOUSE - Complexin-2 OS=Mus musculus GN=Cplx2 PE=1 SV=1 CPLX2_RAT - Complexin-2 OS=Rattus norvegicus GN=Cplx2 PE=1 SV=1 CPLX2_BOVIN - Complexin-2 OS=Bos taurus GN=CPLX2 PE=1 SV=1 gi\|126290948 - gi\|126290948\|ref\|XP_001370865.1\| PREDICTED: hypothetical protein [Monodelphis domestica] gi\|149726060 - gi\|149726060\|ref\|XP_001502792.1\| PREDICTED: similar to Complexin-2 (Complexin II) (CPX II) (Synaphin... gi\|182888019 - gi\|182888019\|gb\|AAI60304.1\| Complexin 2 [synthetic construct]	141.0	[0..1]	[134..1]
gi\|50761882 - gi\|50761882\|ref\|XP_424869.1\| PREDICTED: similar to synaphin 2 [Gallus gallus]	141.0	[0..1]	[134..1]
CPLX1_BOVIN - Complexin-1 OS=Bos taurus GN=CPLX1 PE=2 SV=1	140.0	[0..1]	[134..1]
gi\|108995263 - gi\|108995263\|ref\|XP_001094482.1\| PREDICTED: similar to complexin 1 isoform 3 [Macaca mulatta] CPLX1_MACFA - Complexin-1 OS=Macaca fascicularis GN=CPLX1 PE=2 SV=1	139.0	[0..1]	[134..1]
gi\|37590711, gi\|... - gi\|37590711\|gb\|AAH59299.1\| MGC68923 protein [Xenopus laevis], gi\|162139014\|ref\|NP_001080000.1\| hypot...	139.0	[0..1]	[134..1]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFVMKQALG GATKDMGKML GGDEEKDPDA QKKEEERQEA LRQQEDERKQ KHIRMETERE  60
   61 KVRQQIRDKY GLKKKEEKEA EEKAAMEAPI EGSLTRPKKA IPAGCGDEDE EDEESILDTV 120
  121 LKYLPGPLQD MFKK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	74.318759
Match:	PF05835.3
Description:	No description for PF05835.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.416	N/A	N/A	a.25.1	Ferritin-like
View	Download	0.319	N/A	N/A	d.67.3	Ribosome recycling factor, RRF
View	Download	0.318	N/A	N/A	f.34.1	Mechanosensitive channel protein MscS (YggB), transmembrane region
View	Download	0.316	N/A	N/A	a.24.26	Description not found.
View	Download	0.306	N/A	N/A	a.22.1	Histone-fold
View	Download	0.282	N/A	N/A	d.67.3	Ribosome recycling factor, RRF
View	Download	0.276	N/A	N/A	d.82.2	Frataxin-like
View	Download	0.272	N/A	N/A	d.67.3	Ribosome recycling factor, RRF
View	Download	0.245	N/A	N/A	d.19.1	MHC antigen-recognition domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits