YRC Public Data Repository - Protein Structure Prediction

Protein:	CLPS_ECOLI
Organism:	Escherichia coli
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CLPS_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|126104765, gi... - gi\|126463101\|ref\|YP_001044215.1\| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacter sphaer... gi\|221160924, gi... - gi\|221640143\|ref\|YP_002526405.1\| ATP-dependent Clp protease adapter protein clpS [Rhodobacter sphaer... gi\|77464259, gi\|... - gi\|77464259\|ref\|YP_353763.1\| ATP-dependent Clp protease adaptor protein clpS [Rhodobacter sphaeroide...	159.0	[0..1]	[105..1]
CLPS_RHOS5 - ATP-dependent Clp protease adapter protein ClpS OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH ...	158.0	[0..1]	[105..8]
gi\|238728347, gi... - gi\|77979256\|ref\|ZP_00834676.1\| COG2127: Uncharacterized conserved protein [Yersinia intermedia ATCC ...	156.0	[0..1]	[106..1]
gi\|85688052, gi\|... - gi\|85709342\|ref\|ZP_01040407.1\| ATP-dependent Clp protease adaptor protein ClpS [Erythrobacter sp. NA...	155.0	[0..2]	[106..36]
gi\|238714570, gi... - gi\|77958339\|ref\|ZP_00822374.1\| COG2127: Uncharacterized conserved protein [Yersinia bercovieri ATCC ... gi\|238720293, gi... - gi\|77963071\|ref\|ZP_00826884.1\| COG2127: Uncharacterized conserved protein [Yersinia mollaretii ATCC ...	155.0	[0..1]	[106..1]
gi\|25321110 - gi\|25321110\|pir\|\|AI3353 protein yljA [imported] - Brucella melitensis (strain 16M) gi\|17982759, gi\|... - gi\|17987098\|ref\|NP_539732.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella melitensis 16...	155.0	[0..2]	[105..32]
gi\|94495922, gi\|... - gi\|94495922\|ref\|ZP_01302501.1\| hypothetical protein SKA58_15107 [Sphingomonas sp. SKA58], gi\|9442461...	155.0	[0..5]	[106..23]
CLPS_HALHL - ATP-dependent Clp protease adapter protein ClpS OS=Halorhodospira halophila (strain DSM 244 / SL1) G...	155.0	[0..1]	[106..1]
gi\|148559927, gi... - gi\|148559927\|ref\|YP_001259088.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella ovis ATCC... gi\|237815589, gi... - gi\|237815589\|ref\|ZP_04594586.1\| ATP-dependent Clp protease adapter protein clpS [Brucella abortus st... gi\|23502048, gi\|... - gi\|23502048\|ref\|NP_698175.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella suis 1330], g... gi\|225627638, gi... - gi\|225627638\|ref\|ZP_03785675.1\| ATP-dependent Clp protease adapter protein clpS [Brucella ceti str. ... gi\|82700008 - gi\|82700008\|ref\|YP_414582.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella melitensis bi... gi\|62290083, gi\|... - gi\|62290083\|ref\|YP_221876.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella abortus bv. 1... gi\|82616109 - gi\|82616109\|emb\|CAJ11148.1\| Protein of unknown function DUF174 [Brucella melitensis biovar Abortus 2...	155.0	[0..2]	[105..32]
gi\|68191357, gi\|... - gi\|69277480\|ref\|ZP_00612815.1\| ATP-dependent Clp protease adaptor protein ClpS [Mesorhizobium sp. BN...	155.0	[0..3]	[105..30]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKTNDWLDF DQLAEEKVRD ALKPPSMYKV ILVNDDYTPM EFVIDVLQKF FSYDVERATQ  60
   61 LMLAVHYQGK AICGVFTAEV AETKVAMVNK YARENEHPLL CTLEKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.69897
Match:	1mbuC
Description:	Adaptor protein ClpS (YljA)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits