YRC Public Data Repository - Protein Structure Prediction

Protein:	CLPS_CAUCR
Organism:	Caulobacter vibrioides
Length:	119 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CLPS_CAUCR.

Description	E-value	Query Range	Subject Range
gi\|68191357, gi\|... - gi\|69277480\|ref\|ZP_00612815.1\| ATP-dependent Clp protease adaptor protein ClpS [Mesorhizobium sp. BN...	164.0	[0..4]	[118..18]
gi\|113872897, gi... - gi\|150396335\|ref\|YP_001326802.1\| ATP-dependent Clp protease adaptor protein ClpS [Sinorhizobium medi...	161.0	[0..1]	[118..1]
gi\|25321110 - gi\|25321110\|pir\|\|AI3353 protein yljA [imported] - Brucella melitensis (strain 16M) gi\|17982759, gi\|... - gi\|17987098\|ref\|NP_539732.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella melitensis 16...	159.0	[0..8]	[118..25]
CLS1_RHIME, CLPS... - (Q92Q63) ATP-dependent Clp protease adaptor protein clpS 1, ATP-dependent Clp protease adapter prote... CLPS1_RHIME - ATP-dependent Clp protease adapter protein ClpS 1 OS=Rhizobium meliloti (strain 1021) GN=clpS1 PE=3 ...	159.0	[0..1]	[118..1]
gi\|148559927, gi... - gi\|148559927\|ref\|YP_001259088.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella ovis ATCC... gi\|237815589, gi... - gi\|237815589\|ref\|ZP_04594586.1\| ATP-dependent Clp protease adapter protein clpS [Brucella abortus st... gi\|23502048, gi\|... - gi\|23502048\|ref\|NP_698175.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella suis 1330], g... gi\|225627638, gi... - gi\|225627638\|ref\|ZP_03785675.1\| ATP-dependent Clp protease adapter protein clpS [Brucella ceti str. ... gi\|82700008 - gi\|82700008\|ref\|YP_414582.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella melitensis bi... gi\|62290083, gi\|... - gi\|62290083\|ref\|YP_221876.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella abortus bv. 1... gi\|82616109 - gi\|82616109\|emb\|CAJ11148.1\| Protein of unknown function DUF174 [Brucella melitensis biovar Abortus 2...	158.0	[0..8]	[118..25]
gi\|218460323 - gi\|218460323\|ref\|ZP_03500414.1\| ATP-dependent Clp protease adaptor protein ClpS [Rhizobium etli Kim ... gi\|86281629, gi\|... - gi\|86357527\|ref\|YP_469419.1\| ATP-dependent Clp protease adaptor protein ClpS [Rhizobium etli CFN 42]...	157.0	[0..1]	[118..1]
CLPS_CAUSK - ATP-dependent Clp protease adapter protein ClpS OS=Caulobacter sp. (strain K31) GN=clpS PE=3 SV=1	157.0	[0..11]	[119..1]
RPA3148 - RPA3148 DUF174 3555032:3555430 reverse MW:14742	157.0	[0..7]	[118..20]
gi\|86572543, gi\|... - gi\|86749515\|ref\|YP_486011.1\| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas palus...	156.0	[0..2]	[118..15]
CLPS_BRUME - ATP-dependent Clp protease adapter protein ClpS OS=Brucella melitensis biotype 1 (strain 16M / ATCC ... CLPS_BRUME - ATP-dependent Clp protease adapter protein clpS OS=Brucella melitensis GN=clpS PE=3 SV=2 CLPS_BRUMB - ATP-dependent Clp protease adapter protein ClpS OS=Brucella melitensis biotype 2 (strain ATCC 23457)...	156.0	[0..8]	[118..5]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MICPPGENKS MAERKQGGQG NGVGSSVVTE VKPKTQKPSL YRVLILNDDY TPMEFVVYVL  60
   61 ERFFNKSRED ATRIMLHVHQ NGVGVCGVYT YEVAETKVAQ VIDSARRHQH PLQCTMEKD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.39794
Match:	1mbuC
Description:	Adaptor protein ClpS (YljA)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits