YRC Public Data Repository - Protein Structure Prediction

Protein:	CLPS_BRUME
Organism:	Brucella melitensis
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CLPS_BRUME.

Description	E-value	Query Range	Subject Range
gi\|25321110 - gi\|25321110\|pir\|\|AI3353 protein yljA [imported] - Brucella melitensis (strain 16M) gi\|17982759, gi\|... - gi\|17987098\|ref\|NP_539732.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella melitensis 16...	168.0	[0..1]	[116..21]
gi\|148559927, gi... - gi\|148559927\|ref\|YP_001259088.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella ovis ATCC... gi\|237815589, gi... - gi\|237815589\|ref\|ZP_04594586.1\| ATP-dependent Clp protease adapter protein clpS [Brucella abortus st... gi\|23502048, gi\|... - gi\|23502048\|ref\|NP_698175.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella suis 1330], g... gi\|225627638, gi... - gi\|225627638\|ref\|ZP_03785675.1\| ATP-dependent Clp protease adapter protein clpS [Brucella ceti str. ... gi\|82700008 - gi\|82700008\|ref\|YP_414582.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella melitensis bi... gi\|62290083, gi\|... - gi\|62290083\|ref\|YP_221876.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella abortus bv. 1... gi\|82616109 - gi\|82616109\|emb\|CAJ11148.1\| Protein of unknown function DUF174 [Brucella melitensis biovar Abortus 2...	168.0	[0..1]	[116..21]
gi\|68191357, gi\|... - gi\|69277480\|ref\|ZP_00612815.1\| ATP-dependent Clp protease adaptor protein ClpS [Mesorhizobium sp. BN...	165.0	[0..1]	[116..18]
CLPS_BRUSI - ATP-dependent Clp protease adapter protein ClpS OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN... CLPS_BRUC2 - ATP-dependent Clp protease adapter protein ClpS OS=Brucella canis (strain ATCC 23365 / NCTC 10854) G... gi\|254697528 - gi\|254697528\|ref\|ZP_05159356.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella abortus bv... CLPS_BRUSU - ATP-dependent Clp protease adapter protein ClpS OS=Brucella suis biovar 1 (strain 1330) GN=clpS PE=3... gi\|254704457 - gi\|254704457\|ref\|ZP_05166285.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella suis bv. 3... CLPS_BRUSU - ATP-dependent Clp protease adapter protein clpS OS=Brucella suis GN=clpS PE=3 SV=2 CLPS_BRUA1 - ATP-dependent Clp protease adapter protein ClpS OS=Brucella abortus (strain S19) GN=clpS PE=3 SV=1 gi\|254689393 - gi\|254689393\|ref\|ZP_05152647.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella abortus bv... gi\|254693877 - gi\|254693877\|ref\|ZP_05155705.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella abortus bv... gi\|254714240 - gi\|254714240\|ref\|ZP_05176051.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella ceti M644/... gi\|254717676 - gi\|254717676\|ref\|ZP_05179487.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella ceti M13/0... gi\|254706649 - gi\|254706649\|ref\|ZP_05168477.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella pinnipedia... gi\|254710244 - gi\|254710244\|ref\|ZP_05172055.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella pinnipedia... gi\|254719232 - gi\|254719232\|ref\|ZP_05181043.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella sp. 83/13] gi\|254730423 - gi\|254730423\|ref\|ZP_05189001.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella abortus bv...	164.0	[0..1]	[116..1]
gi\|218460323 - gi\|218460323\|ref\|ZP_03500414.1\| ATP-dependent Clp protease adaptor protein ClpS [Rhizobium etli Kim ... gi\|86281629, gi\|... - gi\|86357527\|ref\|YP_469419.1\| ATP-dependent Clp protease adaptor protein ClpS [Rhizobium etli CFN 42]...	161.0	[0..1]	[116..1]
CLPS_RHOS5 - ATP-dependent Clp protease adapter protein ClpS OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH ...	160.0	[0..1]	[116..1]
gi\|113872897, gi... - gi\|150396335\|ref\|YP_001326802.1\| ATP-dependent Clp protease adaptor protein ClpS [Sinorhizobium medi...	159.0	[0..1]	[116..1]
gi\|114765842, gi... - gi\|114765842\|ref\|ZP_01444935.1\| ATP-dependent Clp protease, adaptor protein ClpS [Roseovarius sp. HT...	159.0	[0..1]	[116..5]
gi\|126104765, gi... - gi\|126463101\|ref\|YP_001044215.1\| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacter sphaer... gi\|221160924, gi... - gi\|221640143\|ref\|YP_002526405.1\| ATP-dependent Clp protease adapter protein clpS [Rhodobacter sphaer... gi\|77464259, gi\|... - gi\|77464259\|ref\|YP_353763.1\| ATP-dependent Clp protease adaptor protein clpS [Rhodobacter sphaeroide...	159.0	[0..12]	[116..2]
gi\|78695442, gi\|... - gi\|78695442\|ref\|ZP_00859954.1\| conserved hypothetical protein [Bradyrhizobium sp. BTAi1], gi\|7851711...	157.0	[0..2]	[116..9]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRFNTIMQG KTNGGNGPES GTVVVTRTQP KTRKPSLYRV LLLNDDYTPM EFVVHVLQRF  60
   61 FQKNLDDATR IMLHVHNHGV GECGVFTYEV AETKVSQVMD FARQNQHPLQ CVMEKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.39794
Match:	1mbuC
Description:	Adaptor protein ClpS (YljA)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits