YRC Public Data Repository - Protein Structure Prediction

Protein:	CITX_ECOLI
Organism:	Escherichia coli
Length:	183 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CITX_ECOLI.

Description	E-value	Query Range	Subject Range
CITX_ECOUT - Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase OS=Escherichia coli (strain UTI89 / UPEC)... CITX_ECOK1 - Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase OS=Escherichia coli O1:K1 / APEC GN=citX ... gi\|226898623, gi... - gi\|237707413\|ref\|ZP_04537894.1\| apo-citrate lyase phosphoribosyl-dephospho-CoA transferase [Escheric... CITX_ECO45 - Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase OS=Escherichia coli O45:K1 (strain S88 / ...	276.0	[0..1]	[183..1]
sp\|B7UKQ6\|CITX_ECO27 - Probable apo-citrate lyase phosphoribosyl-dephospho-CoA transferase OS=Escherichia coli O127:H6 (str... gi\|75240770, gi\|... - gi\|75240770\|ref\|ZP_00724677.1\| COG3697: Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetas... gi\|227884406, gi... - gi\|227884406\|ref\|ZP_04002211.1\| 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo-citrate lyase [Esche... CITX_ECO27 - Probable apo-citrate lyase phosphoribosyl-dephospho-CoA transferase OS=Escherichia coli O127:H6 (str... CITX_ECOL6 - Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase OS=Escherichia coli O6:H1 (strain CFT073 ... CITX_ECOL5 - Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase OS=Escherichia coli O6:K15:H31 (strain 53... CITX_ECO81 - Probable apo-citrate lyase phosphoribosyl-dephospho-CoA transferase OS=Escherichia coli O81 (strain ... CITX_ECOL6 - Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase OS=Escherichia coli O6 GN=citX PE=3 SV=1	273.0	[0..1]	[183..1]
CITX_ECO8A - Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase OS=Escherichia coli O8 (strain IAI1) GN=c... gi\|193063380, gi... - gi\|75258649\|ref\|ZP_00730056.1\| COG3697: Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetas... gi\|192957560, gi... - gi\|75236596\|ref\|ZP_00720684.1\| COG3697: Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetas... gi\|194413925, gi... - gi\|75210758\|ref\|ZP_00710890.1\| COG3697: Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetas... CITX_ECO24 - Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase OS=Escherichia coli O139:H28 (strain E243...	272.0	[0..1]	[183..1]
CITX_ECOLC - Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase OS=Escherichia coli (strain ATCC 8739 / D... gi\|124530186, gi... - gi\|124530186\|ref\|ZP_01700935.1\| Holo-ACP synthase [Escherichia coli B], gi\|124499349\|gb\|EAY46839.1\| ... gi\|75514708, gi\|... - gi\|75514708\|ref\|ZP_00736963.1\| COG3697: Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetas... CITX_ECOHS - Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase OS=Escherichia coli O9:H4 (strain HS) GN=...	272.0	[0..1]	[183..1]
gi\|15800329, gi\|... - gi\|15800329\|ref\|NP_286341.1\| 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo-citrate lyase [Escheric... gi\|25367962 - gi\|25367962\|pir\|\|A85561 hypothetical protein ybdU [imported] - Escherichia coli (strain O157:H7, su...	272.0	[0..1]	[183..1]
gi\|194432527, gi... - gi\|83570442\|ref\|ZP_00921887.1\| COG3697: Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetas...	271.0	[0..1]	[183..1]
CITX_SHIF8 - Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase OS=Shigella flexneri serotype 5b (strain ...	270.0	[0..1]	[183..1]
gi\|62126852, gi\|... - gi\|62179219\|ref\|YP_215636.1\| 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo-citrate lyase [Salmonel... gi\|224466980, gi... - gi\|224582453\|ref\|YP_002636251.1\| 2'-(5'-triphosphoribosyl)-3'-dephospho-CoA:apo- citrate lyase [Salm...	251.0	[0..1]	[180..1]
gi\|16763997, gi\|... - gi\|16763997\|ref\|NP_459612.1\| 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo-citrate lyase [Salmonel... lcl\|NC_016856.1_... - [gene=citX] [protein=2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo- citrate lyase] [protein_id=YP_... gi\|205271689, gi... - gi\|205351908\|ref\|YP_002225709.1\| 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo-citrate lyase [Salm... gi\|206707889, gi... - gi\|207856086\|ref\|YP_002242737.1\| 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo-citrate lyase [Salm... gi\|205330864, gi... - gi\|205330864\|gb\|EDZ17628.1\| holo-ACP synthase CitX [Salmonella enterica subsp. enterica serovar 4,[5... gi\|195631616, gi... - gi\|195631616\|gb\|EDX50136.1\| holo-ACP synthase CitX [Salmonella enterica subsp. enterica serovar Newp...	248.0	[0..1]	[179..1]
gi\|77960306, gi\|... - gi\|77960306\|ref\|ZP_00824184.1\| COG3697: Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetas...	246.0	[0..3]	[179..4]

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Predicted Domain #1

Region A:
Residues: [1-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLLPELASH HAVSIPELLV SRDERQARQH VWLKRHPVPL VSFTVVAPGP IKDSEVTRRI  60
   61 FNHGVTALRA LAAKQGWQIQ EQAALVSASG PEGMLSIAAP ARDLKLATIE LEHSHPLGRL 120
  121 WDIDVLTPEG EILSRRDYSL PPRRCLLCEQ SAAVCARGKT HQLTDLLNRM EALLNDVDAC 180
  181 NVN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	109.823909
Match:	PF03802.5
Description:	No description for PF03802.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.675	N/A	N/A	d.92.2	beta-N-acetylhexosaminidase-like domain
View	Download	0.629	N/A	N/A	f.18.1	F1F0 ATP synthase subunit A
View	Download	0.602	N/A	N/A	d.14.1	Ribosomal protein S5 domain 2-like
View	Download	0.581	N/A	N/A	c.57.1	Molybdenum cofactor biosynthesis proteins
View	Download	0.570	N/A	N/A	d.92.2	beta-N-acetylhexosaminidase-like domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits