YRC Public Data Repository - Protein Structure Prediction

Protein:	CHEW_ECOLI
Organism:	Escherichia coli
Length:	167 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CHEW_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|12515951, gi\|... - gi\|15802299\|ref\|NP_288324.1\| purine-binding chemotaxis protein [Escherichia coli O157:H7 EDL933], gi... gi\|25298645 - gi\|25298645\|pir\|\|A85802 positive regulator of CheA protein activity [imported] - Escherichia coli (s...	155.0	[0..1]	[167..1]
gi\|88773938, gi\|... - gi\|88794813\|ref\|ZP_01110518.1\| chemotaxis protein CheW [Alteromonas macleodii 'Deep ecotype'], gi\|88...	154.0	[0..12]	[161..13]
gi\|187430778, gi... - gi\|75175739\|ref\|ZP_00695939.1\| COG0835: Chemotaxis signal transduction protein [Shigella boydii BS51...	152.0	[0..1]	[167..1]
gi\|224583576, gi... - gi\|224583576\|ref\|YP_002637374.1\| purine binding chemotaxis protein [Salmonella enterica subsp. enter... gi\|207856559, gi... - gi\|207856559\|ref\|YP_002243210.1\| purine-binding chemotaxis protein [Salmonella enterica subsp. enter... gi\|204931049, gi... - gi\|204931049\|ref\|ZP_03221875.1\| purine binding chemotaxis protein [Salmonella enterica subsp. enteri... gi\|194734423, gi... - gi\|194734423\|ref\|YP_002114957.1\| purine binding chemotaxis protein [Salmonella enterica subsp. enter... gi\|194457105, gi... - gi\|194470741\|ref\|ZP_03076725.1\| purine binding chemotaxis protein [Salmonella enterica subsp. enteri... CHEW_SALTY - Chemotaxis protein CheW OS=Salmonella typhimurium GN=cheW PE=4 SV=1 gi\|194408150, gi... - gi\|194449846\|ref\|YP_002045975.1\| purine-binding chemotaxis protein [Salmonella enterica subsp. enter... gi\|194445162, gi... - gi\|194445162\|ref\|YP_002041187.1\| purine binding chemotaxis protein [Salmonella enterica subsp. enter... gi\|199603021, gi... - gi\|200390576\|ref\|ZP_03217187.1\| purine binding chemotaxis protein [Salmonella enterica subsp. enteri... gi\|197939500, gi... - gi\|198244984\|ref\|YP_002215162.1\| purine binding chemotaxis protein [Salmonella enterica subsp. enter... gi\|197362087, gi... - gi\|197362087\|ref\|YP_002141724.1\| purine-binding chemotaxis protein [Salmonella enterica subsp. enter... gi\|197212853, gi... - gi\|197249150\|ref\|YP_002146100.1\| chemotaxis protein cheW [Salmonella enterica subsp. enterica serova... CHEW_SALTY - Chemotaxis protein CheW OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=cheW PE=1... lcl\|NC_016856.1_... - [gene=cheW] [protein=purine-binding chemotaxis protein] [protein_id=YP_005237888.1] [location=comple... CHEW_SALTY - Chemotaxis protein cheW OS=Salmonella typhimurium GN=cheW PE=4 SV=1 gi\|56413161, gi\|... - gi\|56413161\|ref\|YP_150236.1\| purine-binding chemotaxis protein [Salmonella enterica subsp. enterica ... gi\|197288705, gi... - gi\|197288705\|gb\|EDY28080.1\| purine binding chemotaxis protein [Salmonella enterica subsp. enterica s... gi\|168234014, gi... - gi\|205331993\|gb\|EDZ18757.1\| purine binding chemotaxis protein [Salmonella enterica subsp. enterica s... gi\|167994226, gi... - gi\|205327900\|gb\|EDZ14664.1\| purine binding chemotaxis protein [Salmonella enterica subsp. enterica s... gi\|205322872, gi... - gi\|205322872\|gb\|EDZ10711.1\| purine binding chemotaxis protein [Salmonella enterica subsp. enterica s... gi\|205342697, gi... - gi\|205342697\|gb\|EDZ29461.1\| purine binding chemotaxis protein [Salmonella enterica subsp. enterica s... gi\|168462545, gi... - gi\|195633850\|gb\|EDX52202.1\| purine binding chemotaxis protein [Salmonella enterica subsp. enterica s... gi\|205350952, gi... - gi\|205350952\|gb\|EDZ37583.1\| purine binding chemotaxis protein [Salmonella enterica subsp. enterica s... gi\|205339434, gi... - gi\|205339434\|gb\|EDZ26198.1\| purine binding chemotaxis protein [Salmonella enterica subsp. enterica s... gi\|238912503 - gi\|238912503\|ref\|ZP_04656340.1\| purine-binding chemotaxis protein [Salmonella enterica subsp. enteri... gi\|161362884, gi... - gi\|161613520\|ref\|YP_001587485.1\| purine-binding chemotaxis protein [Salmonella enterica subsp. enter...	151.0	[0..1]	[167..1]
gi\|37199389, gi\|... - gi\|37680641\|ref\|NP_935250.1\| chemotaxis signal transduction protein [Vibrio vulnificus YJ016], gi\|37... gi\|27361451, gi\|... - gi\|27365304\|ref\|NP_760832.1\| chemotaxis signal transduction protein [Vibrio vulnificus CMCP6], gi\|27...	150.0	[0..12]	[160..14]
gi\|83647830, gi\|... - gi\|83647830\|ref\|YP_436265.1\| chemotaxis signal transduction protein [Hahella chejuensis KCTC 2396], ...	150.0	[0..16]	[161..15]
gi\|76874678, gi\|... - gi\|77359767\|ref\|YP_339342.1\| purine-binding chemotaxis protein [Pseudoalteromonas haloplanktis TAC12...	150.0	[0..13]	[161..16]
gi\|76791972, gi\|... - gi\|76791972\|ref\|ZP_00774475.1\| CheW-like protein [Pseudoalteromonas atlantica T6c], gi\|76592661\|gb\|E...	150.0	[0..1]	[161..1]
gi\|62128130, gi\|... - gi\|62180497\|ref\|YP_216914.1\| purine-binding chemotaxis protein [Salmonella enterica subsp. enterica ...	150.0	[0..1]	[167..1]
gi\|84377202, gi\|... - gi\|84388135\|ref\|ZP_00991031.1\| Chemotaxis signal transduction protein [Vibrio splendidus 12B01], gi\|...	150.0	[0..1]	[160..4]

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Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGMTNVTKL ASEPSGQEFL VFTLGDEEYG IDILKVQEIR GYDQVTRIAN TPAFIKGVTN  60
   61 LRGVIVPIVD LRIKFSQVDV DYNDNTVVIV LNLGQRVVGI VVDGVSDVLS LTAEQIRPAP 120
  121 EFAVTLSTEY LTGLGALGDR MLILVNIEKL LNSEEMALLD SAASEVA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.69897
Match:	2ho9A
Description:	No description for 2ho9A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits