YRC Public Data Repository - Protein Structure Prediction

Protein:	CHBG_SHIFL
Organism:	Shigella flexneri
Length:	252 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CHBG_SHIFL.

Description	E-value	Query Range	Subject Range
gi\|193068929, gi... - gi\|75236798\|ref\|ZP_00720869.1\| COG3394: Uncharacterized protein conserved in bacteria [Escherichia c...	375.0	[0..1]	[252..1]
CHBG_SHISS - Chitooligosaccharide deacetylase OS=Shigella sonnei (strain Ss046) GN=chbG PE=3 SV=1	373.0	[0..1]	[252..1]
CHBG_ECOL6 - Chitooligosaccharide deacetylase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=c... gi\|227885844, gi... - gi\|227885844\|ref\|ZP_04003649.1\| YdjC protein [Escherichia coli 83972], gi\|227837417\|gb\|EEJ47883.1\| Y... CHBG_ECOL6 - UPF0249 protein ChbG OS=Escherichia coli O6 GN=chbG PE=3 SV=1	372.0	[0..1]	[252..1]
gi\|75256135, gi\|... - gi\|75256135\|ref\|ZP_00727831.1\| COG3394: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|191169018, gi... - gi\|75227706\|ref\|ZP_00714441.1\| COG3394: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|194413422, gi... - gi\|75210220\|ref\|ZP_00710388.1\| COG3394: Uncharacterized protein conserved in bacteria [Escherichia c... CHBG_ECO24 - Chitooligosaccharide deacetylase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=chbG PE=3 S...	372.0	[0..1]	[252..1]
gi\|191171629, gi... - gi\|75241392\|ref\|ZP_00725243.1\| COG3394: Uncharacterized protein conserved in bacteria [Escherichia c... CHBG_ECOL5 - Chitooligosaccharide deacetylase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=chbG PE=3 SV=...	371.0	[0..1]	[252..1]
CHBG_ECO45 - Chitooligosaccharide deacetylase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=chbG PE=3 SV=1 CHBG_ECOK1 - Chitooligosaccharide deacetylase OS=Escherichia coli O1:K1 / APEC GN=chbG PE=3 SV=1 CHBG_ECO81 - Chitooligosaccharide deacetylase OS=Escherichia coli O81 (strain ED1a) GN=chbG PE=3 SV=1 CHBG_ECOUT - Chitooligosaccharide deacetylase OS=Escherichia coli (strain UTI89 / UPEC) GN=chbG PE=3 SV=1	370.0	[0..1]	[252..1]
gi\|15831693, gi\|... - gi\|15831693\|ref\|NP_310466.1\| hypothetical protein ECs2439 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|217328633, gi... - gi\|217328633\|ref\|ZP_03444714.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... CHBG_ECO57 - Chitooligosaccharide deacetylase OS=Escherichia coli O157:H7 GN=chbG PE=3 SV=1 gi\|195937417 - gi\|195937417\|ref\|ZP_03082799.1\| hypothetical protein EscherichcoliO157_13367 [Escherichia coli O157:... gi\|189377526, gi... - gi\|189377526\|gb\|EDU95942.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|189371981, gi... - gi\|189371981\|gb\|EDU90397.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|189000342, gi... - gi\|189000342\|gb\|EDU69328.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|209768712, gi... - pir\|\|C85782 hypothetical protein ydjC [imported] - Escherichia coli (strain O157:H7, substrain EDL9... CHBG_ECO5E - Chitooligosaccharide deacetylase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=chbG PE=3 SV=... gi\|208740358, gi... - gi\|208820235\|ref\|ZP_03260555.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|208731122, gi... - gi\|208816779\|ref\|ZP_03257899.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|12515749, gi\|... - gi\|15802144\|ref\|NP_288166.1\| hypothetical protein Z2763 [Escherichia coli O157:H7 EDL933], gi\|125157... gi\|208724816, gi... - gi\|208810300\|ref\|ZP_03252176.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|188016285, gi... - gi\|188016285\|gb\|EDU54407.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|168774964, gi... - gi\|187769449\|gb\|EDU33293.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|189360615, gi... - gi\|189360615\|gb\|EDU79034.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|168762201, gi... - gi\|189367446\|gb\|EDU85862.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|168756737, gi... - gi\|189356178\|gb\|EDU74597.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|254592751, gi... - gi\|254793351\|ref\|YP_003078188.1\| hypothetical protein ECSP_2301 [Escherichia coli O157:H7 str. TW143...	368.0	[0..1]	[252..1]
EG12198 - chito-oligosaccharide deacetylase / Chito-oligosaccharide deacetylase CHBG_ECODH - Chitooligosaccharide deacetylase OS=Escherichia coli (strain K12 / DH10B) GN=chbG PE=3 SV=1 EG12198 - chito-oligosaccharide deacetylase / Chito-oligosaccharide deacetylase CHBG_ECOBW - Chitooligosaccharide deacetylase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=chbG PE=3 SV=... CHBG_ECOLI - UPF0249 protein chbG - Escherichia coli gi\|1742830, gi\|8... - gi\|89108572\|ref\|AP_002352.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|174... gi\|194438500, gi... - gi\|83586032\|ref\|ZP_00924670.1\| COG3394: Uncharacterized protein conserved in bacteria [Escherichia c...	367.0	[0..1]	[252..1]
gi\|194418297, gi... - gi\|83569666\|ref\|ZP_00921117.1\| COG3394: Uncharacterized protein conserved in bacteria [Shigella dyse...	366.0	[0..1]	[252..1]
gi\|188486962, gi... - gi\|75513771\|ref\|ZP_00736147.1\| COG3394: Uncharacterized protein conserved in bacteria [Escherichia c... CHBG_ECOHS - Chitooligosaccharide deacetylase OS=Escherichia coli O9:H4 (strain HS) GN=chbG PE=3 SV=1 CHBG_ECOLC - Chitooligosaccharide deacetylase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=chbG ... gi\|124529987, gi... - gi\|124529987\|ref\|ZP_01700799.1\| YdjC family protein [Escherichia coli B], gi\|124499540\|gb\|EAY47027.1...	366.0	[0..1]	[252..1]

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Predicted Domain #1

Region A:
Residues: [1-252]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERLLIVNAD DFGLSKGQNY GIIEACRNGI VTSTTALVNG QAIDHAVQLS RDEPSLAIGM  60
   61 HFVLTMGKPL TAMPGLTRDG VLGKWIWQLA EEDALPLEEI TQELASQYLR FIELFGRKPT 120
  121 HLDSHHHVHM FPQIFPIVAR FAAEEGIALR IDRQPLSNAG DLPANLRSSQ GFSSAFYGEE 180
  181 ISEALFLQVL DDASHRGDPS LEVMCHPAFI DNTIRQSAYC FPRLTELEVL TSASLKYAIA 240
  241 ERGYRLGSYL DV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.69897
Match:	2i5iA
Description:	No description for 2i5iA was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.412391974836	bayes_pls_golite062009
hydrolase activity	0.333866445066122	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: