YRC Public Data Repository - Protein Structure Prediction

Protein:	CH10_SYNP7
Organism:	Synechococcus elongatus PCC 7942
Length:	103 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CH10_SYNP7.

Description	E-value	Query Range	Subject Range
gi\|27353501, gi\|... - gi\|27380337\|ref\|NP_771866.1\| co-chaperonin GroES [Bradyrhizobium japonicum USDA 110], gi\|27353501\|db...	143.0	[0..9]	[102..3]
gi\|78695632, gi\|... - gi\|78695632\|ref\|ZP_00860143.1\| heat shock protein [Bradyrhizobium sp. BTAi1], gi\|78516195\|gb\|EAP2949...	143.0	[0..9]	[102..3]
gi\|68189669, gi\|... - gi\|69280014\|ref\|ZP_00614729.1\| Chaperonin Cpn10 [Mesorhizobium sp. BNC1], gi\|68189669\|gb\|EAN04333.1\|...	142.0	[0..6]	[103..1]
CH11_BRAJA, CH10... - (P77828) 10 kDa chaperonin 1 (Protein Cpn10 1) (groES protein 1), 10 kDa chaperonin 1 OS=Bradyrhizob... CH101_BRADU - 10 kDa chaperonin 1 OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / US...	142.0	[0..9]	[102..1]
gi\|115522887, gi... - gi\|115522887\|ref\|YP_779798.1\| chaperonin Cpn10 [Rhodopseudomonas palustris BisA53], gi\|115516834\|gb\|...	141.0	[0..6]	[103..1]
gi\|86571988, gi\|... - gi\|86748960\|ref\|YP_485456.1\| co-chaperonin GroES [Rhodopseudomonas palustris HaA2], gi\|86571988\|gb\|A...	141.0	[0..6]	[103..1]
gi\|85698671, gi\|... - gi\|85714224\|ref\|ZP_01045212.1\| co-chaperonin GroES [Nitrobacter sp. Nb-311A], gi\|85698671\|gb\|EAQ3654...	141.0	[0..6]	[103..1]
gi\|78491966, gi\|... - gi\|90426196\|ref\|YP_534566.1\| co-chaperonin GroES [Rhodopseudomonas palustris BisB18], gi\|90108210\|gb...	140.0	[0..6]	[103..1]
groES1 - groES1 chaperonin GroES1, cpn10 1249536:1249832 reverse MW:10624 CH11_RHOPA, CH10... - (P60366) 10 kDa chaperonin 1 (Protein Cpn10 1) (groES protein 1), 10 kDa chaperonin 1 OS=Rhodopseudo... gi\|167368297, gi... - gi\|192289742\|ref\|YP_001990347.1\| chaperonin Cpn10 [Rhodopseudomonas palustris TIE-1], gi\|192283491\|g...	140.0	[0..6]	[103..1]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVSLSVST VTPLGDRVFV KVAEAEEKTA GGIILPDNAK EKPQVGEIVA VGPGKSNDDG  60
   61 SRQAPEVKIG DKVLYSKYAG TDIKLGNDDY VLLSEKDILA VVA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.522879
Match:	1hx5A
Description:	Chaperonin-10 (GroES)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits