YRC Public Data Repository - Protein Structure Prediction

Protein:	CFI1_MEDSA
Organism:	Medicago sativa
Length:	222 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CFI1_MEDSA.

Description	E-value	Query Range	Subject Range
CFI1_FRAAN - Chalcone--flavonone isomerase 1 OS=Fragaria ananassa GN=CHI1 PE=2 SV=1	294.0	[0..1]	[222..1]
CFI_CAMSI - Chalcone--flavonone isomerase OS=Camellia sinensis GN=CHI PE=2 SV=2	287.0	[0..2]	[215..6]
CFI1_VITVI - Chalcone--flavonone isomerase 1 OS=Vitis vinifera GN=CHI1 PE=2 SV=1	285.0	[0..3]	[217..5]
gi\|22218879, gi\|... - gi\|22218880\|pdb\|1JX0\|B Chain B, Chalcone Isomerase--Y106f Mutant, gi\|22218879\|pdb\|1JX0\|A Chain A, Ch...	282.0	[0..1]	[222..1]
gi\|228617 - gi\|228617\|prf\|\|1807331A chalcone flavanone isomerase	282.0	[0..1]	[216..57]
CFI_ELAUM - Chalcone--flavonone isomerase OS=Elaeagnus umbellata GN=CHI PE=2 SV=1	279.0	[0..1]	[217..1]
CFI2_LOTJA - Chalcone--flavonone isomerase 2 OS=Lotus japonicus GN=CHI2 PE=2 SV=1	278.0	[0..1]	[217..1]

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Predicted Domain #1

Region A:
Residues: [1-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASITAITV ENLEYPAVVT SPVTGKSYFL GGAGERGLTI EGNFIKFTAI GVYLEDIAVA  60
   61 SLAAKWKGKS SEELLETLDF YRDIISGPFE KLIRGSKIRE LSGPEYSRKV MENCVAHLKS 120
  121 VGTYGDAEAE AMQKFAEAFK PVNFPPGASV FYRQSPDGIL GLSFSPDTSI PEKEAALIEN 180
  181 KAVSSAVLET MIGEHAVSPD LKRCLAARLP ALLNEGAFKI GN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.69897
Match:	1eypA
Description:	Chalcone isomerase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits