YRC Public Data Repository - Protein Structure Prediction

Protein:	CEC2_DROVI
Organism:	Drosophila virilis
Length:	63 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CEC2_DROVI.

Description	E-value	Query Range	Subject Range
gi\|2582213 - gi\|2582213\|gb\|AAB82465.1\| cecropin A1 [Drosophila melanogaster]	102.0	[0..1]	[63..1]
CECA1_DROSI - Cecropin-A1 OS=Drosophila simulans GN=CecA1 PE=3 SV=1	102.0	[0..1]	[63..1]
gi\|2582315 - gi\|2582315\|gb\|AAB82516.1\| cecropin C [Drosophila mauritiana]	101.0	[0..1]	[63..1]
CECC_DROYA - Cecropin-C OS=Drosophila yakuba GN=CecC PE=2 SV=1 CECC_DROER - Cecropin-C OS=Drosophila erecta GN=CecC PE=2 SV=1 CECC_DROTK - Cecropin-C OS=Drosophila takahashii GN=CecC PE=2 SV=1 CECC_DROOR - Cecropin-C OS=Drosophila orena GN=CecC PE=2 SV=1 CECC_DROTE - Cecropin-C OS=Drosophila teissieri GN=CecC PE=2 SV=1	101.0	[0..1]	[63..1]
gi\|54637417, gi\|... - gi\|54637417\|gb\|EAL26819.1\| GA12491-PA [Drosophila pseudoobscura], gi\|125772853\|ref\|XP_001357685.1\| G...	101.0	[0..1]	[63..1]
CEC1_DROVI - Cecropin-1/3 OS=Drosophila virilis GN=Cec1 PE=3 SV=1	101.0	[0..1]	[63..1]

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Predicted Domain #1

Region A:
Residues: [1-63]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFYKVFIFV ALILAISLGQ SEAGWLKKIG KKIERVGQHT RDATIQGLGI AQQAANVAAT  60
   61 ARG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.645	a.4.1	Homeodomain-like
View	Download	0.600	a.23.7	Description not found.
View	Download	0.564	a.35.1	lambda repressor-like DNA-binding domains
View	Download	0.518	a.8.1	Bacterial immunoglobulin/albumin-binding domains
View	Download	0.497	a.3.1	Cytochrome c
View	Download	0.494	a.177.1	Sigma2 domain of RNA polymerase sigma factors
View	Download	0.494	a.112.1	Description not found.
View	Download	0.461	a.144.1	PABC (PABP) domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits