YRC Public Data Repository - Protein Structure Prediction

Protein:	CEA_ECOLX
Organism:	Escherichia coli
Length:	204 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CEA_ECOLX.

Description	E-value	Query Range	Subject Range
CEA_CITFR - Colicin-A OS=Citrobacter freundii GN=caa PE=1 SV=1 gi\|144667, gi\|95... - gi\|9507292\|ref\|NP_040393.1\| hypothetical protein pColAp6 [Plasmid ColA], gi\|144667\|gb\|AAA72879.1\| un...	305.0	[0..1]	[204..389]
gi\|145567 - gi\|145567\|gb\|AAA98063.1\| colicin B CEAB_ECOLX - Colicin-B OS=Escherichia coli GN=cba PE=1 SV=3	300.0	[0..2]	[201..312]
gi\|2660584 - gi\|2660584\|emb\|CAA72509.1\| colicin U [Shigella boydii]	294.0	[0..6]	[204..421]
gi\|75175020 - gi\|75175020\|ref\|ZP_00695391.1\| COG0419: ATPase involved in DNA repair [Shigella boydii BS512]	284.0	[0..6]	[204..228]
gi\|33520458, gi\|... - gi\|49234738\|ref\|YP_025360.1\| alveicin B bacteriocin toxin [Hafnia alvei], gi\|33520458\|gb\|AAQ21137.1\|...	235.0	[0..1]	[199..170]

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Predicted Domain #1

Region A:
Residues: [1-204]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VAEKAKDERE LLEKTSELIA GMGDKIGEHL GDKYKAIAKD IADNIKNFQG KTIRSFDDAM  60
   61 ASLNKITANP AMKINKADRD ALVNAWKHVD AQDMANKLGN LSKAFKVADV VMKVEKVREK 120
  121 SIEGYETGNW GPLMLEVESW VLSGIASSVA LGIFSATLGA YALSLGVPAI AVGIAGILLA 180
  181 AVVGALIDDK FADALNNEII RPAH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	75.0
Match:	1colA
Description:	Colicin A
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits