YRC Public Data Repository - Protein Structure Prediction

Protein:	CDH_ECOLI
Organism:	Escherichia coli
Length:	251 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDH_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|26111115, gi\|... - gi\|26250684\|ref\|NP_756724.1\| CDP-diacylglycerol pyrophosphatase [Escherichia coli CFT073], gi\|261111...	435.0	[0..1]	[251..65]
gi\|110807392, gi... - gi\|110807392\|ref\|YP_690912.1\| CDP-diacylglycerol pyrophosphatase [Shigella flexneri 5 str. 8401], gi...	434.0	[0..1]	[251..65]
gi\|91075033, gi\|... - gi\|91213459\|ref\|YP_543445.1\| CDP-diacylglycerol pyrophosphatase [Escherichia coli UTI89], gi\|9107503...	433.0	[0..1]	[251..65]
gi\|117626185, gi... - gi\|117626185\|ref\|YP_859508.1\| CDP-diacylglycerol pyrophosphatase [Escherichia coli APEC O1], gi\|1155... gi\|237702951, gi... - gi\|237702951\|ref\|ZP_04533432.1\| CDP-diacylglycerol pyrophosphatase [Escherichia sp. 3_2_53FAA], gi\|2...	433.0	[0..1]	[251..64]
CDH_ECOL6 - CDP-diacylglycerol pyrophosphatase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN... CDH_ECOL6 - CDP-diacylglycerol pyrophosphatase OS=Escherichia coli O6 GN=cdh PE=3 SV=2 sp\|B7UNN8\|CDH_ECO27 - CDP-diacylglycerol pyrophosphatase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=cdh PE=3 ... gi\|190907003, gi... - gi\|75240311\|ref\|ZP_00724251.1\| COG2134: CDP-diacylglycerol pyrophosphatase [Escherichia coli F11], g... CDH_ECO27 - CDP-diacylglycerol pyrophosphatase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=cdh PE=3 ... gi\|227885340, gi... - gi\|227885340\|ref\|ZP_04003145.1\| CDP-diacylglycerol pyrophosphatase [Escherichia coli 83972], gi\|2278...	431.0	[0..1]	[251..1]
gi\|83569816, gi\|... - gi\|83569816\|ref\|ZP_00921265.1\| COG2134: CDP-diacylglycerol pyrophosphatase [Shigella dysenteriae 101... gi\|209752386, gi... - pir\|\|C91234 CDP-diacylglycerol phosphotidylhydrolase [imported] - Escherichia coli (strain O157:H7, ... gi\|168748786, gi... - gi\|188016755\|gb\|EDU54877.1\| CDP-diacylglycerol pyrophosphatase [Escherichia coli O157:H7 str. EC4113... gi\|168755601, gi... - gi\|189357208\|gb\|EDU75627.1\| CDP-diacylglycerol pyrophosphatase [Escherichia coli O157:H7 str. EC4401... gi\|189367848, gi... - gi\|189367848\|gb\|EDU86264.1\| CDP-diacylglycerol pyrophosphatase [Escherichia coli O157:H7 str. EC4501... gi\|189362620, gi... - gi\|189362620\|gb\|EDU81039.1\| CDP-diacylglycerol pyrophosphatase [Escherichia coli O157:H7 str. EC4486... gi\|187769141, gi... - gi\|187769141\|gb\|EDU32985.1\| CDP-diacylglycerol pyrophosphatase [Escherichia coli O157:H7 str. EC4196... gi\|168780834, gi... - gi\|189001510\|gb\|EDU70496.1\| CDP-diacylglycerol pyrophosphatase [Escherichia coli O157:H7 str. EC4076... gi\|15834097, gi\|... - gi\|15834097\|ref\|NP_312870.1\| CDP-diacylglycerol pyrophosphatase [Escherichia coli O157:H7 str. Sakai... gi\|189373355, gi... - gi\|189373355\|gb\|EDU91771.1\| CDP-diacylglycerol pyrophosphatase [Escherichia coli O157:H7 str. EC869]... gi\|189378103, gi... - gi\|189378103\|gb\|EDU96519.1\| CDP-diacylglycerol pyrophosphatase [Escherichia coli O157:H7 str. EC508]... CDH_ECO57 - CDP-diacylglycerol pyrophosphatase OS=Escherichia coli O157:H7 GN=cdh PE=1 SV=1 CDH_ECOLU - CDP-diacylglycerol pyrophosphatase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=cdh PE... gi\|75211268, gi\|... - gi\|75211268\|ref\|ZP_00711367.1\| COG2134: CDP-diacylglycerol pyrophosphatase [Escherichia coli B171], ... CDH_ECOSM - CDP-diacylglycerol pyrophosphatase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=cdh PE=3 SV=1 gi\|254795918, gi... - gi\|254795918\|ref\|YP_003080755.1\| CDP-diacylglycerol phosphotidylhydrolase [Escherichia coli O157:H7 ... gi\|193063976, gi... - gi\|75258099\|ref\|ZP_00729560.1\| COG2134: CDP-diacylglycerol pyrophosphatase [Escherichia coli E22], g... gi\|195937560 - gi\|195937560\|ref\|ZP_03082942.1\| CDP-diacylglycerol pyrophosphatase [Escherichia coli O157:H7 str. EC... gi\|75176697 - gi\|75176697\|ref\|ZP_00696825.1\| COG2134: CDP-diacylglycerol pyrophosphatase [Shigella boydii BS512] gi\|208727770, gi... - gi\|208807969\|ref\|ZP_03250306.1\| CDP-diacylglycerol pyrophosphatase [Escherichia coli O157:H7 str. EC... CDH_ECO24 - CDP-diacylglycerol pyrophosphatase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=cdh PE=3 ... gi\|208812251, gi... - gi\|208812251\|ref\|ZP_03253580.1\| CDP-diacylglycerol pyrophosphatase [Escherichia coli O157:H7 str. EC... gi\|208818920, gi... - gi\|208818920\|ref\|ZP_03259240.1\| CDP-diacylglycerol pyrophosphatase [Escherichia coli O157:H7 str. EC... CDH_ECO5E - CDP-diacylglycerol pyrophosphatase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=cdh PE=3 SV... CDH_SHISS - CDP-diacylglycerol pyrophosphatase OS=Shigella sonnei (strain Ss046) GN=cdh PE=3 SV=1 gi\|217321970, gi... - gi\|217325749\|ref\|ZP_03441833.1\| CDP-diacylglycerol pyrophosphatase [Escherichia coli O157:H7 str. TW... CDH_SHIBS - CDP-diacylglycerol pyrophosphatase OS=Shigella boydii serotype 4 (strain Sb227) GN=cdh PE=3 SV=1 CDH_ECO55 - CDP-diacylglycerol pyrophosphatase OS=Escherichia coli (strain 55989 / EAEC) GN=cdh PE=3 SV=1	431.0	[0..1]	[251..1]
gi\|191166458, gi... - gi\|75230439\|ref\|ZP_00716925.1\| COG2134: CDP-diacylglycerol pyrophosphatase [Escherichia coli B7A], g... gi\|194438325, gi... - gi\|83586238\|ref\|ZP_00924874.1\| COG2134: CDP-diacylglycerol pyrophosphatase [Escherichia coli 101-1],... gi\|253979926, gi... - gi\|254290619\|ref\|YP_003056367.1\| CDP-diacylglycerol pyrophosphatase [Escherichia coli BL21(DE3)], gi... gi\|242379454, gi... - gi\|251787181\|ref\|YP_003001485.1\| hypothetical protein B21_03752 [Escherichia coli BL21], gi\|24237945... gi\|254163868, gi... - gi\|254163868\|ref\|YP_003046976.1\| CDP-diacylglycerol pyrophosphatase [Escherichia coli B str. REL606]...	431.0	[0..1]	[251..1]
gi\|15804507, gi\|... - gi\|15804507\|ref\|NP_290547.1\| CDP-diacylglycerol pyrophosphatase [Escherichia coli O157:H7 EDL933], g... gi\|25290399 - gi\|25290399\|pir\|\|C86081 CDP-diacylglycerol phosphotidylhydrolase [imported] - Escherichia coli (stra...	429.0	[0..1]	[251..1]
gi\|75513896 - gi\|75513896\|ref\|ZP_00736249.1\| COG2134: CDP-diacylglycerol pyrophosphatase [Escherichia coli 53638] CDH_ECOLC - CDP-diacylglycerol pyrophosphatase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=cdh... gi\|75238361, gi\|... - gi\|75238361\|ref\|ZP_00722360.1\| COG2134: CDP-diacylglycerol pyrophosphatase [Escherichia coli E110019...	428.0	[0..1]	[251..1]
CDH_SHIFL - CDP-diacylglycerol pyrophosphatase OS=Shigella flexneri GN=cdh PE=3 SV=4 gi\|30043048, gi\|... - gi\|30064788\|ref\|NP_838959.1\| CDP-diacylglycerol pyrophosphatase [Shigella flexneri 2a str. 2457T], g... gi\|56384033, gi\|... - gi\|56480482\|ref\|NP_709723.2\| CDP-diacylglycerol pyrophosphatase [Shigella flexneri 2a str. 301], gi\|...	427.0	[0..1]	[251..1]

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Predicted Domain #1

Region A:
Residues: [1-251]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKAGLLFLV MIVIAVVAAG IGYWKLTGEE SDTLRKIVLE ECLPNQQQNQ NPSPCAEVKP  60
   61 NAGYVVLKDL NGPLQYLLMP TYRINGTESP LLTDPSTPNF FWLAWQARDF MSKKYGQPVP 120
  121 DRAVSLAINS RTGRTQNHFH IHISCIRPDV RKQLDNNLAN ISSRWLPLPG GLRGHEYLAR 180
  181 RVTESELVQR SPFMMLAEEV PEAREHMGRY GLAMVRQSDN SFVLLATQRN LLTLNRASAE 240
  241 EIQDHQCEIL R

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	110.0
Match:	2pofA
Description:	No description for 2pofA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits