YRC Public Data Repository - Protein Structure Prediction

Protein:	CD59_AOTTR
Organism:	Aotus trivirgatus
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CD59_AOTTR.

Description	E-value	Query Range	Subject Range
gi\|61361922, gi\|... - gi\|61361922\|gb\|AAX42127.1\| CD59 antigen [synthetic construct], gi\|61361917\|gb\|AAX42126.1\| CD59 antig... CD59 - CD59 molecule, complement regulatory protein	174.0	[0..1]	[128..1]
gi\|60653791, gi\|... - gi\|60653793\|gb\|AAX29590.1\| CD59 antigen p18-20 [synthetic construct], gi\|60653791\|gb\|AAX29589.1\| CD5...	174.0	[0..1]	[128..1]
CD59_PONAB - CD59 glycoprotein OS=Pongo abelii GN=CD59 PE=2 SV=1 CD59_PONPY - CD59 glycoprotein precursor - Pongo pygmaeus (Orangutan)	174.0	[0..1]	[128..1]
gi\|90077478 - gi\|90077478\|dbj\|BAE88419.1\| unnamed protein product [Macaca fascicularis] gi\|109106850, gi... - gi\|109106854\|ref\|XP_001083003.1\| PREDICTED: similar to CD59 antigen p18-20 isoform 4 [Macaca mulatta...	168.0	[0..1]	[128..1]
CD59_MACFA - CD59 glycoprotein OS=Macaca fascicularis GN=CD59 PE=2 SV=1	167.0	[0..1]	[128..1]
CD59_SAISC - CD59 glycoprotein OS=Saimiri sciureus GN=CD59 PE=2 SV=1	157.0	[0..1]	[128..1]
gi\|114636912 - gi\|114636912\|ref\|XP_001140212.1\| PREDICTED: similar to precursor polypeptide (AA -25 to 103) [Pan tr...	157.0	[0..1]	[103..154]
ENSCJAT00000020355 - null CD59_CALSQ - CD59 glycoprotein OS=Callithrix sp. GN=CD59 PE=3 SV=1	154.0	[0..1]	[128..1]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIQGGSVLF GLLLVLAVFC HSGNSLQCYS CPYPTTQCTM TTNCTSNLDS CLIAKAGSRV  60
   61 YYRCWKFEDC TFSRVSNQLS ENELKYYCCK KNLCNFNEAL KNGGTTLSKK TVLLLVIPFL 120
  121 VAAWSLHP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.0
Match:	2j8bA
Description:	No description for 2j8bA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits