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View Structure Prediction Details

Protein: CCMH_ECOLI
Organism: Escherichia coli
Length: 350 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCMH_ECOLI.

Description E-value Query
Range		 Subject
Range
gi|71675440, gi|... - gi|71675440|ref|ZP_00673185.1| TPR repeat:Sel1-like repeat [Trichodesmium erythraeum IMS101], gi|716...
 228.0 [0..52] [348..993]
gi|23123830 - gi|23123830|ref|ZP_00105868.1| COG0457: FOG: TPR repeat [Nostoc punctiforme PCC 73102]
 223.0 [0..20] [349..161]
gi|72002781, gi|... - gi|72382931|ref|YP_292286.1| TPR repeat-containing protein [Prochlorococcus marinus str. NATL2A], gi...
 221.0 [0..45] [347..42]
gi|91079875 - gi|91079875|ref|XP_967579.1| PREDICTED: similar to CG10392-PB, isoform B [Tribolium castaneum]
 221.0 [0..34] [349..263]
gi|56967372, gi|... - gi|62821820|ref|NP_001017359.1| O-linked N-acetylglucosamine transferase isoform 1 [Danio rerio], gi...
 221.0 [0..53] [347..83]
gi|40063047 - gi|40063047|gb|AAR37903.1| TPR domain/sulfotransferase domain protein [uncultured marine bacterium 5...
 220.0 [0..16] [348..71]

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Predicted Domain #1
Region A:
Residues: [1-96] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFLLGVLML MISGSALATI DVLQFKDEAQ EQQFRQLTEE LRCPKCQNNS IADSNSMIAT  60
   61 DLRQKVYELM QEGKSKKEIV DYMVARYGNF VTYDPP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.0
Match: 2hl7A
Description: No description for 2hl7A was found.

Predicted Domain #2
Region A:
Residues: [97-350] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTPLTVLLWV LPVVAIGIGG WVIYARSRRR VRVVPEAFPE QSVPEGKRAG YVVYLPGIVV  60
   61 ALIVAGVSYY QTGNYQQVKI WQQATAQAPA LLDRALDPKA DPLNEEEMSR LALGMRTQLQ 120
  121 KNPGDIEGWI MLGRVGMALG NASIATDAYA TAYRLDPKNS DAALGYAEAL TRSSDPNDNR 180
  181 LGGELLRQLV RTDHSNIRVL SMYAFNAFEQ QRFGEAVAAW EMMLKLLPAN DTRRAVIERS 240
  241 IAQAMQHLSP QESK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.69897
Match: 1kt0A
Description: FKBP51, C-terminal domain; FKBP51, N-terminal domains
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.02652482814057 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle