YRC Public Data Repository - Protein Structure Prediction

Protein:	CCMF_ECOLI
Organism:	Escherichia coli
Length:	647 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCMF_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|82702338, gi\|... - gi\|82702338\|ref\|YP_411904.1\| cytochrome c-type biogenesis protein CcmF [Nitrosospira multiformis ATC...	596.0	[0..1]	[645..1]
gi\|77957976 - gi\|77957976\|ref\|ZP_00822018.1\| COG1138: Cytochrome c biogenesis factor [Yersinia bercovieri ATCC 439...	589.0	[0..1]	[645..1]
gi\|77975552 - gi\|77975552\|ref\|ZP_00831087.1\| COG1138: Cytochrome c biogenesis factor [Yersinia frederiksenii ATCC ...	588.0	[0..1]	[645..1]
gi\|77979092 - gi\|77979092\|ref\|ZP_00834513.1\| COG1138: Cytochrome c biogenesis factor [Yersinia intermedia ATCC 299...	587.0	[0..1]	[645..1]
gi\|90411054, gi\|... - gi\|90411054\|ref\|ZP_01219068.1\| Putative cytochrome c-type biogenesis protein CcmF [Photobacterium pr...	587.0	[0..1]	[643..1]
gi\|71484992, gi\|... - gi\|71549824\|ref\|ZP_00670006.1\| Cytochrome c-type biogenesis protein CcmF [Nitrosomonas eutropha C71]...	587.0	[0..1]	[646..1]
gi\|51596963, gi\|... - gi\|51596963\|ref\|YP_071154.1\| putative cytochrome c-type biogenesis protein [Yersinia pseudotuberculo... gi\|152959491, gi... - gi\|77629692\|ref\|ZP_00792278.1\| COG1138: Cytochrome c biogenesis factor [Yersinia pseudotuberculosis ... gi\|169750276, gi... - gi\|170023742\|ref\|YP_001720247.1\| cytochrome c-type biogenesis protein CcmF [Yersinia pseudotuberculo... gi\|186699072, gi... - gi\|186896046\|ref\|YP_001873158.1\| cytochrome c-type biogenesis protein CcmF [Yersinia pseudotuberculo... Q668U3\|Q668U3_YERPS - Putative cytochrome c-type biogenesis protein precursor - Yersinia pseudotuberculosis	585.0	[0..1]	[643..1]
gi\|54308145, gi\|... - gi\|54308145\|ref\|YP_129165.1\| putative cytochrome c-type biogenesis protein CcmF [Photobacterium prof...	585.0	[0..1]	[643..1]
gi\|162419593, gi... - gi\|77635286\|ref\|ZP_00797372.1\| COG1138: Cytochrome c biogenesis factor [Yersinia pestis Angola], gi\|... gi\|165925290, gi... - gi\|165925290\|ref\|ZP_02221122.1\| cytochrome c-type biogenesis protein CcmF [Yersinia pestis biovar Or... gi\|165992436, gi... - gi\|166008054\|ref\|ZP_02228952.1\| cytochrome c-type biogenesis protein CcmF [Yersinia pestis biovar An... gi\|229898871, gi... - gi\|229898871\|ref\|ZP_04514016.1\| putative cytochrome c-type biogenesis protein [Yersinia pestis biova... gi\|229680177, gi... - gi\|229902730\|ref\|ZP_04517847.1\| putative cytochrome c-type biogenesis protein [Yersinia pestis Nepal... gi\|166214224, gi... - gi\|166214224\|ref\|ZP_02240259.1\| cytochrome c-type biogenesis protein CcmF [Yersinia pestis biovar An... gi\|229895335, gi... - gi\|229895335\|ref\|ZP_04510508.1\| putative cytochrome c-type biogenesis protein [Yersinia pestis Pesto... gi\|167398820, gi... - gi\|167398820\|ref\|ZP_02304344.1\| cytochrome c-type biogenesis protein CcmF [Yersinia pestis biovar An... gi\|229838306, gi... - gi\|229838306\|ref\|ZP_04458465.1\| putative cytochrome c-type biogenesis protein [Yersinia pestis biova... gi\|167421146, gi... - gi\|167421146\|ref\|ZP_02312899.1\| cytochrome c-type biogenesis protein CcmF [Yersinia pestis biovar Or... gi\|167056481, gi... - gi\|167424599\|ref\|ZP_02316352.1\| cytochrome c-type biogenesis protein CcmF [Yersinia pestis biovar Me... gi\|21958360, gi\|... - gi\|22125467\|ref\|NP_668890.1\| cytochrome c-type biogenesis protein [Yersinia pestis KIM], gi\|21958360... gi\|167467416 - gi\|167467416\|ref\|ZP_02332120.1\| cytochrome c-type biogenesis protein CcmF [Yersinia pestis FV-1] gi\|25285360 - pir\|\|AC0334 probable cytochrome c-type biogenesis protein ccmF [imported] - Yersinia pestis (strain ... gi\|15980717, gi\|... - gi\|218929811\|ref\|YP_002347686.1\| putative cytochrome c-type biogenesis protein [Yersinia pestis CO92... gi\|165914893, gi... - gi\|89103124\|ref\|ZP_01175716.1\| COG1138: Cytochrome c biogenesis factor [Yersinia pestis biovar Orien... gi\|45437078, gi\|... - gi\|45442214\|ref\|NP_993753.1\| putative cytochrome c-type biogenesis protein [Yersinia pestis biovar M... gi\|108808099, gi... - gi\|108808099\|ref\|YP_652015.1\| putative cytochrome c-type biogenesis protein [Yersinia pestis Antiqua... gi\|145210995, gi... - gi\|145599299\|ref\|YP_001163375.1\| cytochrome c-type biogenesis protein [Yersinia pestis Pestoides F],... gi\|149365213, gi... - gi\|149365213\|ref\|ZP_01887248.1\| putative cytochrome c-type biogenesis protein [Yersinia pestis CA88-...	585.0	[0..1]	[643..1]
gi\|30248772, gi\|... - gi\|30248772\|ref\|NP_840842.1\| cytochrome c-type biogenesis protein (CcmF) [Nitrosomonas europaea ATCC...	585.0	[0..1]	[646..1]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMPEIGNGLL CLALGIALLL SVYPLWGVAR GDARMMASSR LFAWLLFMSV AGAFLVLVNA  60
   61 FVVNDFTVTY VASNSNTQLP VWYRVAATWG AHEGSLLLWV LLMSGWTFAV AIFSQRI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [118-307]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLDIVARVLA IMGMVSVGFL LFILFTSNPF SRTLPNFPIE GRDLNPLLQD PGLIFHPPLL  60
   61 YMGYVGFSVA FAFAIASLLS GRLDSTYARF TRPWTLAAWI FLTLGIVLGS AWAYYELGWG 120
  121 GWWFWDPVEN ASFMPWLVGT ALMHSLAVTE QRASFKAWTL LLAISAFSLC LLGTFLVRSG 180
  181 VLVSVHAFAS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [308-480]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPARGMFILA FMVLVIGGSL LLFAARGHKV RSRVNNALWS RESLLLANNV LLVAAMLVVL  60
   61 LGTLLPLVHK QLGLGSISIG EPFFNTMFTW LMVPFALLLG VGPLVRWGRD RPRKIRNLLI 120
  121 IAFISTLVLS LLLPWLFESK VVAMTVLGLA MACWIAVLAI AEAALRISRG TKT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [481-647]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TFSYWGMVAA HLGLAVTIVG IAFSQNYSVE RDVRMKSGDS VDIHEYRFTF RDVKEVTGPN  60
   61 WRGGVATIGV TRDGKPETVL YAEKRYYNTA GSMMTEAAID GGITRDLYAA LGEELENGAW 120
  121 AVRLYYKPFV RWIWAGGLMM ALGGLLCLFD PRYRKRVSPQ KTAPEAV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits