YRC Public Data Repository - Protein Structure Prediction

Protein:	CCMD_ECOLI
Organism:	Escherichia coli
Length:	69 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCMD_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|90438843, gi\|... - gi\|90579958\|ref\|ZP_01235766.1\| heme exporter protein D [Vibrio angustum S14], gi\|90438843\|gb\|EAS6402...	91.0	[0..5]	[69..3]
gi\|89073444, gi\|... - gi\|89073444\|ref\|ZP_01159967.1\| heme exporter protein D [Photobacterium sp. SKA34], gi\|89050708\|gb\|EA...	90.0	[0..5]	[69..3]
gi\|91223574, gi\|... - gi\|91223574\|ref\|ZP_01258839.1\| heme exporter protein D [Vibrio alginolyticus 12G01], gi\|91191660\|gb\|... gi\|75854961, gi\|... - gi\|75854961\|ref\|ZP_00762628.1\| COG3114: Heme exporter protein D [Vibrio sp. Ex25], gi\|116184395\|ref\|...	90.0	[0..5]	[69..3]
gi\|68544069, gi\|... - gi\|68544069\|ref\|ZP_00583744.1\| Heme exporter protein D (CcmD) [Shewanella baltica OS155], gi\|6851822... gi\|160873354, gi... - gi\|160873354\|ref\|YP_001552670.1\| Heme exporter protein D (CcmD) [Shewanella baltica OS195], gi\|16085...	89.0	[0..4]	[68..2]
gi\|4378407 - gi\|4378407\|gb\|AAD19540.1\| CcmD [Pantoea citrea]	89.0	[0..1]	[69..1]
gi\|119946642, gi... - gi\|119946642\|ref\|YP_944322.1\| Heme exporter protein D (CcmD) [Psychromonas ingrahamii 37], gi\|119865...	89.0	[0..4]	[69..2]
gi\|90328265, gi\|... - gi\|90411052\|ref\|ZP_01219066.1\| heme exporter protein D [Photobacterium profundum 3TCK], gi\|90328265\|...	89.0	[0..5]	[69..3]
gi\|37680636, gi\|... - gi\|37680636\|ref\|NP_935245.1\| heme exporter protein D [Vibrio vulnificus YJ016], gi\|37199384\|dbj\|BAC9...	89.0	[0..5]	[69..3]
gi\|218708853, gi... - gi\|218708853\|ref\|YP_002416474.1\| Cytochrome c-type biogenesis protein ccmD (Heme exporter protein D)... gi\|86146107, gi\|... - gi\|86146107\|ref\|ZP_01064433.1\| heme exporter protein D [Vibrio sp. MED222], gi\|85836054\|gb\|EAQ54186....	89.0	[0..4]	[69..2]
gi\|84388140, gi\|... - gi\|84388140\|ref\|ZP_00991036.1\| heme exporter protein D [Vibrio splendidus 12B01], gi\|84377207\|gb\|EAP...	88.0	[0..4]	[69..2]

Back

Predicted Domain #1

Region A:
Residues: [1-69]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPAFASWNE FFAMGGYAFF VWLAVVMTVI PLVVLVVHSV MQHRAILRGV AQQRAREARL  60
   61 RAAQQQEAA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits