YRC Public Data Repository - Protein Structure Prediction

Protein:	CCKN_TRASC
Organism:	Trachemys scripta
Length:	130 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCKN_TRASC.

Description	E-value	Query Range	Subject Range
CCKN_STRCA - Cholecystokinin OS=Struthio camelus GN=CCK PE=1 SV=1	209.0	[0..1]	[130..1]
CCKN_CHICK - Cholecystokinin OS=Gallus gallus GN=CCK PE=1 SV=1	197.0	[0..1]	[130..1]
CCKN_LITCT - Cholecystokinin OS=Lithobates catesbeiana GN=CCK PE=1 SV=2	185.0	[0..1]	[130..1]
gi\|2246429 - gi\|2246429\|emb\|CAB10585.1\| preprocholecystokinin [Squalus acanthias]	178.0	[0..1]	[130..1]
CCK_PYTMO - Cholecystokinin-8 OS=Python molurus GN=CCK PE=2 SV=1	176.0	[0..1]	[130..1]
gi\|38198207 - gi\|38198207\|dbj\|BAD01500.1\| cholecystokinin [Anguilla japonica]	167.0	[0..1]	[130..1]
CCKNB_XENLA - Cholecystokinin B OS=Xenopus laevis GN=cck-b PE=2 SV=1	166.0	[0..1]	[130..1]
gi\|55620065 - gi\|55620065\|ref\|XP_516386.1\| PREDICTED: cholecystokinin isoform 2 [Pan troglodytes]	161.0	[0..1]	[130..1]
gi\|30584119, gi\|... - gi\|60653099\|gb\|AAX29244.1\| cholecystokinin [synthetic construct], gi\|60653097\|gb\|AAX29243.1\| cholecy...	160.0	[0..1]	[130..1]

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Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYSGICIYMF LAMLSTSSSG QQATGSHNEN PVATELEQSL TEHHRHVRVP SSAGQLKPIQ  60
   61 RLDGNVDQKA NIGALLAKYL QQARKGPTGR ISMMGNRVQN IDPTHRINDR DYMGWMDFGR 120
  121 RSAEEYEYSS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	48.142668
Match:	PF00918.8
Description:	No description for PF00918.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits