YRC Public Data Repository - Protein Structure Prediction

Protein:	CATE_ECOLI
Organism:	Escherichia coli
Length:	753 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CATE_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|4930104, gi\|4... - gi\|4930106\|pdb\|1QF7\|D Chain D, Structure Of The Mutant His392gln Of Catalase Hpii From E. Coli, gi\|4...	861.0	[0..1]	[753..1]
gi\|191169012, gi... - gi\|75227707\|ref\|ZP_00714442.1\| COG0753: Catalase [Escherichia coli B7A], gi\|191169012\|ref\|ZP_0303077... gi\|218361066, gi... - gi\|218554298\|ref\|YP_002387211.1\| hydroperoxidase II [Escherichia coli IAI1], gi\|218361066\|emb\|CAQ986...	860.0	[0..1]	[753..1]
gi\|192957794, gi... - gi\|75236799\|ref\|ZP_00720870.1\| COG0753: Catalase [Escherichia coli E110019], gi\|193068999\|ref\|ZP_030...	859.0	[0..1]	[753..1]
gi\|30063001, gi\|... - gi\|30063001\|ref\|NP_837172.1\| hydroperoxidase II [Shigella flexneri 2a str. 2457T], gi\|30041250\|gb\|AA... gi\|56479915, gi\|... - gi\|56479915\|ref\|NP_707380.2\| hydroperoxidase II [Shigella flexneri 2a str. 301], gi\|56383466\|gb\|AAN4...	859.0	[0..1]	[753..1]
gi\|110805459, gi... - gi\|110805459\|ref\|YP_688979.1\| hydroperoxidase II [Shigella flexneri 5 str. 8401], gi\|110615007\|gb\|AB...	859.0	[0..1]	[753..1]

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Predicted Domain #1

Region A:
Residues: [1-753]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQHNEKNPH QHQSPLHDSS EAKPGMDSLA PEDGSHRPAA EPTPPGAQPT APGSLKAPDT  60
   61 RNEKLNSLED VRKGSENYAL TTNQGVRIAD DQNSLRAGSR GPTLLEDFIL REKITHFDHE 120
  121 RIPERIVHAR GSAAHGYFQP YKSLSDITKA DFLSDPNKIT PVFVRFSTVQ GGAGSADTVR 180
  181 DIRGFATKFY TEEGIFDLVG NNTPIFFIQD AHKFPDFVHA VKPEPHWAIP QGQSAHDTFW 240
  241 DYVSLQPETL HNVMWAMSDR GIPRSYRTME GFGIHTFRLI NAEGKATFVR FHWKPLAGKA 300
  301 SLVWDEAQKL TGRDPDFHRR ELWEAIEAGD FPEYELGFQL IPEEDEFKFD FDLLDPTKLI 360
  361 PEELVPVQRV GKMVLNRNPD NFFAENEQAA FHPGHIVPGL DFTNDPLLQG RLFSYTDTQI 420
  421 SRLGGPNFHE IPINRPTCPY HNFQRDGMHR MGIDTNPANY EPNSINDNWP RETPPGPKRG 480
  481 GFESYQERVE GNKVRERSPS FGEYYSHPRL FWLSQTPFEQ RHIVDGFSFE LSKVVRPYIR 540
  541 ERVVDQLAHI DLTLAQAVAK NLGIELTDDQ LNITPPPDVN GLKKDPSLSL YAIPDGDVKG 600
  601 RVVAILLNDE VRSADLLAIL KALKAKGVHA KLLYSRMGEV TADDGTVLPI AATFAGAPSL 660
  661 TVDAVIVPCG NIADIADNGD ANYYLMEAYK HLKPIALAGD ARKFKATIKI ADQGEEGIVE 720
  721 ADSADGSFMD ELLTLMAAHR VWSRIPKIDK IPA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1qf7A
Description:	Catalase, C-terminal domain; Catalase II
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits