YRC Public Data Repository - Protein Structure Prediction

Protein:	CALC_CHICK
Organism:	Gallus gallus
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CALC_CHICK.

Description	E-value	Query Range	Subject Range
gi\|50747798, gi\|... - gi\|50747798\|ref\|XP_420997.1\| PREDICTED: similar to Calcitonin [Gallus gallus], gi\|164654166\|gb\|ABY65...	215.0	[0..1]	[138..1]
CALC_HORSE - Calcitonin OS=Equus caballus GN=CALCA PE=2 SV=1	209.0	[0..1]	[134..1]
gi\|109107241 - gi\|109107241\|ref\|XP_001088995.1\| PREDICTED: similar to Calcitonin precursor [Macaca mulatta]	202.0	[0..1]	[130..193]
gi\|179827 - gi\|179827\|gb\|AAA51913.1\| preprocalcitonin	198.0	[0..1]	[130..1]
gi\|116062127, gi... - gi\|157278529\|ref\|NP_001098365.1\| calcitonin 2 [Oryzias latipes], gi\|116062127\|dbj\|BAF34696.1\| calcit...	196.0	[0..1]	[135..1]
gi\|185135463, gi... - gi\|28415625\|dbj\|BAC57418.1\| salmon calcitonin-IV precursor [Oncorhynchus mykiss], gi\|185135463\|ref\|N...	196.0	[0..1]	[135..1]
gi\|19772949 - gi\|19772949\|emb\|CAC81278.1\| calcitonin [Takifugu rubripes]	195.0	[0..1]	[136..1]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVMLKISSFL AVYALVVCQM DSFQAAPVRP GLESITDRVT LSDYEARRLL NALVKDFIQM  60
   61 TAEELEQASE GNSLDRPISK RCASLSTCVL GKLSQELHKL QTYPRTDVGA GTPGKKRNVL 120
  121 NDLDHERYAN YGETLGNN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits