YRC Public Data Repository - Protein Structure Prediction

Protein:	C56I_ECOLI
Organism:	Escherichia coli
Length:	188 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for C56I_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|15595619, gi\|... - gi\|9946278\|gb\|AAG03811.1\|AE004479_6 conserved hypothetical protein [Pseudomonas aeruginosa PAO1], gi... gi\|107099408 - gi\|107099408\|ref\|ZP_01363326.1\| hypothetical protein PaerPA_01000420 [Pseudomonas aeruginosa PACS2] gi\|11347654 - pir\|\|A83593 conserved hypothetical protein PA0422 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|254237344, gi... - gi\|84318661\|ref\|ZP_00967082.1\| COG3038: Cytochrome B561 [Pseudomonas aeruginosa C3719], gi\|254237344... gi\|115589374, gi... - gi\|32043602\|ref\|ZP_00140864.1\| COG3038: Cytochrome B561 [Pseudomonas aeruginosa UCBPP-PA14], gi\|1160... gi\|84324509, gi\|... - gi\|84324509\|ref\|ZP_00972567.1\| COG3038: Cytochrome B561 [Pseudomonas aeruginosa 2192], gi\|254243520\|...	162.0	[0..1]	[181..1]
gi\|150963605, gi... - gi\|94415738\|ref\|ZP_01295574.1\| hypothetical protein PaerP_01002515 [Pseudomonas aeruginosa PA7], gi\|...	162.0	[0..1]	[181..1]
gi\|84704005, gi\|... - gi\|84704005\|ref\|ZP_01017833.1\| hypothetical protein PB2503_09874 [Parvularcula bermudensis HTCC2503]...	160.0	[0..5]	[187..2]
gi\|110805076, gi... - gi\|110805076\|ref\|YP_688596.1\| putative cytochrome [Shigella flexneri 5 str. 8401], gi\|110614624\|gb\|A...	159.0	[0..1]	[188..26]
gi\|95112949 - gi\|95112949\|emb\|CAK17677.1\| putative cytochrome, b561 family [Pseudomonas entomophila L48] gi\|104783962, gi... - gi\|95112949\|emb\|CAK17677.1\| putative cytochrome, b561 family [Pseudomonas entomophila L48], gi\|10478...	156.0	[0..1]	[182..1]
gi\|82777531, gi\|... - gi\|82777531\|ref\|YP_403880.1\| putative cytochrome [Shigella dysenteriae Sd197], gi\|81241679\|gb\|ABB623...	156.0	[0..1]	[188..1]
gi\|86163200, gi\|... - gi\|87121668\|ref\|ZP_01077556.1\| hypothetical protein MED121_05138 [Marinomonas sp. MED121], gi\|861632...	156.0	[0..3]	[182..1]
gi\|110646009, gi... - gi\|110832898\|ref\|YP_691757.1\| putative cytochrome [Alcanivorax borkumensis SK2], gi\|110646009\|emb\|CA...	155.0	[0..1]	[180..1]
gi\|83644649, gi\|... - gi\|83644649\|ref\|YP_433084.1\| cytochrome B561 [Hahella chejuensis KCTC 2396], gi\|83632692\|gb\|ABC28659...	154.0	[0..3]	[182..2]
gi\|48730903, gi\|... - gi\|77461506\|ref\|YP_351013.1\| cytochrome B561 [Pseudomonas fluorescens Pf0-1], gi\|77385509\|gb\|ABA7702...	154.0	[0..1]	[182..1]

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Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFTNTPERY GVISAAFHWL SAIIVYGMFA LGLWMVTLSY YDGWYHKAPE LHKSIGILLM  60
   61 MGLVIRVLWR VISPPPGPLP SYSPMTRLAA RAGHLALYLL LFAIGISGYL ISTADGKPIS 120
  121 VFGWFDVPAT LADAGAQADF AGALHFWLAW SVVVLSVMHG FMALKHHFID KDDTLKRMLG 180
  181 KSSSDYGV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.69897
Match:	1kqfC
Description:	Formate dehydrogenase N, cytochrome (gamma) subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.426992404333318	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: