YRC Public Data Repository - Protein Structure Prediction

Protein:	C562_SALTY
Organism:	Salmonella typhimurium
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for C562_SALTY.

Description	E-value	Query Range	Subject Range
gi\|83569391, gi\|... - gi\|83569391\|ref\|ZP_00920845.1\| COG3783: Soluble cytochrome b562 [Shigella dysenteriae 1012], gi\|1944...	8.0E-40	[1..128]	[1..128]
gi\|186894174, gi... - gi\|186894174\|ref\|YP_001871286.1\| cytochrome b562 [Yersinia pseudotuberculosis PB1/+], gi\|186697200\|g... gi\|152959803, gi... - gi\|153948308\|ref\|YP_001402212.1\| cytochrome b562 [Yersinia pseudotuberculosis IP 31758], gi\|15295980... gi\|170025604, gi... - gi\|170025604\|ref\|YP_001722109.1\| cytochrome b562 [Yersinia pseudotuberculosis YPIII], gi\|169752138\|g... gi\|51595160, gi\|... - gi\|51595160\|ref\|YP_069351.1\| putative cytochrome b(562) [Yersinia pseudotuberculosis IP 32953], gi\|5... Q66E83\|Q66E83_YERPS - Putative cytochrome b(562) precursor - Yersinia pseudotuberculosis	1.0E-39	[1..128]	[1..127]
gi\|16123473, gi\|... - gi\|218930341\|ref\|YP_002348216.1\| putative cytochrome B562 [Yersinia pestis CO92], gi\|16123473\|ref\|NP... gi\|45440223, gi\|... - gi\|45440223\|ref\|NP_991762.1\| putative cytochrome B562 [Yersinia pestis biovar Microtus str. 91001], ... gi\|229901154, gi... - gi\|229901154\|ref\|ZP_04516277.1\| putative cytochrome B562 [Yersinia pestis Nepal516], gi\|229681879\|gb... gi\|108780728, gi... - gi\|108808815\|ref\|YP_652731.1\| putative cytochrome B562 [Yersinia pestis Antiqua], gi\|108780728\|gb\|AB... gi\|149289270, gi... - gi\|153997633\|ref\|ZP_02022733.1\| putative cytochrome B562 [Yersinia pestis CA88-4125], gi\|149289270\|g... gi\|229700496, gi... - gi\|229896422\|ref\|ZP_04511590.1\| putative cytochrome B562 [Yersinia pestis Pestoides A], gi\|229700496... gi\|145211991, gi... - gi\|145600295\|ref\|YP_001164371.1\| cytochrome B562 [Yersinia pestis Pestoides F], gi\|145211991\|gb\|ABP4... gi\|229687001, gi... - gi\|229899509\|ref\|ZP_04514650.1\| putative cytochrome B562 [Yersinia pestis biovar Orientalis str. Ind... C5621_YERPE - Probable soluble cytochrome b562 1 OS=Yersinia pestis GN=cybC1 PE=3 SV=1 gi\|167467630 - gi\|167467630\|ref\|ZP_02332334.1\| cytochrome B562 [Yersinia pestis FV-1] gi\|229838942, gi... - gi\|229838942\|ref\|ZP_04459101.1\| putative cytochrome B562 [Yersinia pestis biovar Orientalis str. PEX...	1.0E-39	[1..128]	[1..127]
gi\|227836284, gi... - gi\|227886711\|ref\|ZP_04004516.1\| soluble cytochrome b562 precursor [Escherichia coli 83972], gi\|22783... C562_ECOL6 - Soluble cytochrome b562 OS=Escherichia coli O6 GN=cybC PE=3 SV=1 gi\|215489581, gi... - gi\|215489581\|ref\|YP_002332012.1\| cytochrome b562 [Escherichia coli O127:H6 str. E2348/69], gi\|215267... gi\|170520855, gi... - gi\|170683137\|ref\|YP_001746638.1\| soluble cytochrome b562 [Escherichia coli SMS-3-5], gi\|170520855\|gb... C562_ECOL6 - Soluble cytochrome b562 OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=cybC PE=3 ...	2.0E-39	[1..128]	[1..128]
gi\|110644597, gi... - gi\|110644597\|ref\|YP_672327.1\| soluble cytochrome precursor [Escherichia coli 536], gi\|110346189\|gb\|A... gi\|218430188, gi... - gi\|218692624\|ref\|YP_002400836.1\| soluble cytochrome b562 [Escherichia coli ED1a], gi\|218430188\|emb\|C... gi\|117626582, gi... - gi\|117626582\|ref\|YP_859905.1\| soluble cytochrome b562 precursor [Escherichia coli APEC O1], gi\|11551... gi\|91075363, gi\|... - gi\|91213789\|ref\|YP_543775.1\| soluble cytochrome b562 precursor [Escherichia coli UTI89], gi\|91075363... gi\|188495739, gi... - gi\|75515473\|ref\|ZP_00737630.1\| COG3783: Soluble cytochrome b562 [Escherichia coli 53638], gi\|1884957... gi\|75242376, gi\|... - gi\|75242376\|ref\|ZP_00726138.1\| COG3783: Soluble cytochrome b562 [Escherichia coli F11], gi\|191170768... gi\|187730191, gi... - gi\|75179337\|ref\|ZP_00699341.1\| COG3783: Soluble cytochrome b562 [Shigella boydii BS512], gi\|18773019... gi\|218551530, gi... - gi\|218551530\|ref\|YP_002385322.1\| soluble cytochrome b562 [Escherichia fergusonii ATCC 35469], gi\|218... gi\|226901823, gi... - gi\|237703911\|ref\|ZP_04534392.1\| soluble cytochrome b562 [Escherichia sp. 3_2_53FAA], gi\|226901823\|gb...	2.0E-39	[1..128]	[1..128]
gi\|254796255, gi... - gi\|254796255\|ref\|YP_003081092.1\| soluble cytochrome b562 [Escherichia coli O157:H7 str. TW14359], gi... C562_ECO57 - Soluble cytochrome b562 OS=Escherichia coli O157:H7 GN=cybC PE=3 SV=1 gi\|38704247 - gi\|38704247\|ref\|NP_313240.2\| cytochrome b(562) [Escherichia coli O157:H7 str. Sakai] gi\|209396412, gi... - gi\|209396412\|ref\|YP_002273778.1\| soluble cytochrome b562 [Escherichia coli O157:H7 str. EC4115], gi\|... gi\|208821190, gi... - gi\|208821190\|ref\|ZP_03261510.1\| soluble cytochrome b562 [Escherichia coli O157:H7 str. EC4042], gi\|2... gi\|217322594, gi... - gi\|217326373\|ref\|ZP_03442457.1\| soluble cytochrome b562 [Escherichia coli O157:H7 str. TW14588], gi\|... gi\|195937261 - gi\|195937261\|ref\|ZP_03082643.1\| cytochrome b(562) [Escherichia coli O157:H7 str. EC4024] gi\|168797811, gi... - gi\|189379448\|gb\|EDU97864.1\| soluble cytochrome b562 [Escherichia coli O157:H7 str. EC508], gi\|168797... gi\|208813569, gi... - gi\|208813569\|ref\|ZP_03254898.1\| soluble cytochrome b562 [Escherichia coli O157:H7 str. EC4045], gi\|2... gi\|208727256, gi... - gi\|208807455\|ref\|ZP_03249792.1\| soluble cytochrome b562 [Escherichia coli O157:H7 str. EC4206], gi\|2... gi\|168774047, gi... - gi\|187770306\|gb\|EDU34150.1\| soluble cytochrome b562 [Escherichia coli O157:H7 str. EC4196], gi\|16877... gi\|189363902, gi... - gi\|189363902\|gb\|EDU82321.1\| soluble cytochrome b562 [Escherichia coli O157:H7 str. EC4486], gi\|16876... gi\|168784881, gi... - gi\|189375091\|gb\|EDU93507.1\| soluble cytochrome b562 [Escherichia coli O157:H7 str. EC869], gi\|168784... gi\|168782758, gi... - gi\|188999822\|gb\|EDU68808.1\| soluble cytochrome b562 [Escherichia coli O157:H7 str. EC4076], gi\|16878... gi\|188014801, gi... - gi\|188014801\|gb\|EDU52923.1\| soluble cytochrome b562 [Escherichia coli O157:H7 str. EC4113], gi\|16875... gi\|168760486, gi... - gi\|189368886\|gb\|EDU87302.1\| soluble cytochrome b562 [Escherichia coli O157:H7 str. EC4501], gi\|16876... gi\|168754813, gi... - gi\|189357869\|gb\|EDU76288.1\| soluble cytochrome b562 [Escherichia coli O157:H7 str. EC4401], gi\|16875...	2.0E-39	[1..128]	[1..128]
gi\|253775139, gi... - gi\|253775139\|ref\|YP_003037970.1\| cytochrome b562 [Escherichia coli BL21(DE3)], gi\|253326183\|gb\|ACT30... gi\|218363555, gi... - gi\|218556786\|ref\|YP_002389700.1\| soluble cytochrome b562 [Escherichia coli IAI1], gi\|218363555\|emb\|C... gi\|209921732, gi... - gi\|209921732\|ref\|YP_002295816.1\| cytochrome b562 [Escherichia coli SE11], gi\|209914991\|dbj\|BAG80065.... gi\|110617570, gi... - gi\|110808022\|ref\|YP_691542.1\| cytochrome b(562) [Shigella flexneri 5 str. 8401], gi\|110617570\|gb\|ABF... gi\|218434942, gi... - gi\|218707845\|ref\|YP_002415364.1\| soluble cytochrome b562 [Escherichia coli UMN026], gi\|218434942\|emb... C562_ECOLX - Soluble cytochrome b562 OS=Escherichia coli GN=cybC PE=1 SV=1 gi\|115260 - sp\|P00192\|C562_ECOLI Soluble cytochrome b562 precursor (Cytochrome b-562) gi\|75188949, gi\|... - gi\|75188949\|ref\|ZP_00702216.1\| COG3783: Soluble cytochrome b562 [Escherichia coli E24377A], gi\|15715... C562_ECOLI - Soluble cytochrome b562 precursor - Escherichia coli (strain K12)	6.0E-39	[1..128]	[1..128]
gi\|169756681, gi... - gi\|170021753\|ref\|YP_001726707.1\| cytochrome b562 [Escherichia coli ATCC 8739], gi\|169756681\|gb\|ACA79... gi\|193069841, gi... - gi\|75235455\|ref\|ZP_00719663.1\| COG3783: Soluble cytochrome b562 [Escherichia coli E110019], gi\|19306... gi\|190902717, gi... - gi\|75229607\|ref\|ZP_00716146.1\| COG3783: Soluble cytochrome b562 [Escherichia coli B7A], gi\|191167264... gi\|194423265, gi... - gi\|83586735\|ref\|ZP_00925367.1\| COG3783: Soluble cytochrome b562 [Escherichia coli 101-1], gi\|1944377... gi\|124528298, gi... - gi\|124528298\|ref\|ZP_01699622.1\| transcriptional regulator, Fis family [Escherichia coli B], gi\|12450... gi\|218561396, gi... - gi\|218561396\|ref\|YP_002394309.1\| soluble cytochrome b562 [Escherichia coli S88], gi\|218368165\|emb\|CA...	1.0E-38	[1..128]	[1..128]
gi\|218697986, gi... - gi\|218697986\|ref\|YP_002405653.1\| soluble cytochrome b562 [Escherichia coli 55989], gi\|218354718\|emb\|... gi\|75258338, gi\|... - gi\|75258338\|ref\|ZP_00729769.1\| COG3783: Soluble cytochrome b562 [Escherichia coli E22], gi\|193063642... gi\|75212209, gi\|... - gi\|75212209\|ref\|ZP_00712249.1\| COG3783: Soluble cytochrome b562 [Escherichia coli B171], gi\|19442669... gi\|157069390, gi... - gi\|75198087\|ref\|ZP_00708157.1\| COG3783: Soluble cytochrome b562 [Escherichia coli HS], gi\|157163710\|...	1.0E-38	[1..128]	[1..128]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKSLLAILA VSSLVFGSAV FAADLEDNMD ILNDNLKVVE KTDSAPELKA ALTKMRAAAL  60
   61 DAQKATPPKL EDKAPDSPEM KDFRHGFDIL VGQIDGALKL ANEGNVKEAK AAAEALKTTR 120
  121 NTYHKKYR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.221849
Match:	1apcA
Description:	SOLUTION STRUCTURE OF APOCYTOCHROME B562
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits