YRC Public Data Repository - Protein Structure Prediction

Protein:	BPT1_BOVIN
Organism:	Bos taurus
Length:	100 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BPT1_BOVIN.

Description	E-value	Query Range	Subject Range
gi\|226393 - gi\|226393\|prf\|\|1510193A BPTI	112.0	[0..1]	[100..1]
gi\|47219204 - gi\|47219204\|emb\|CAG11222.1\| unnamed protein product [Tetraodon nigroviridis]	108.0	[0..2]	[95..4292]
gi\|68385220 - gi\|68385220\|ref\|XP_692457.1\| PREDICTED: similar to alpha 3 type VI collagen isoform 1 precursor [Dan...	107.0	[0..7]	[96..1581]
gi\|22255990 - gi\|22255990\|gb\|AAM94857.1\| trophoblast Kunitz domain protein 5 [Ovis aries]	106.0	[0..27]	[96..436]
gi\|50757538 - gi\|50757538\|ref\|XP_415557.1\| PREDICTED: similar to Hypothetical protein MGC76314 [Gallus gallus]	106.0	[0..3]	[93..398]
gi\|4102791 - gi\|4102791\|gb\|AAD01586.1\| TFPIbeta [Mus musculus]	106.0	[0..8]	[100..71]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMSRLCLSV ALLVLLGTLA ASTPGCDTSN QAKAQRPDFC LEPPYTGPCK ARIIRYFYNA  60
   61 KAGLCQTFVY GGCRAKRNNF KSAEDCMRTC GGAIGPWENL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.30103
Match:	1f5rI
Description:	Pancreatic trypsin inhibitor, BPTI
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits