YRC Public Data Repository - Protein Structure Prediction

Protein:	BIOD_ECOLI
Organism:	Escherichia coli
Length:	224 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BIOD_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|58002285, gi\|... - gi\|58039871\|ref\|YP_191835.1\| GTP-binding protein [Gluconobacter oxydans 621H], gi\|58002285\|gb\|AAW611...	180.0	[0..3]	[222..143]
gi\|114537657, gi... - gi\|114706709\|ref\|ZP_01439609.1\| hypothetical protein FP2506_17874 [Fulvimarina pelagi HTCC2506], gi\|...	180.0	[0..3]	[220..135]
gi\|78363672, gi\|... - gi\|78485386\|ref\|YP_391311.1\| putative ATP-binding protein [Thiomicrospira crunogena XCL-2], gi\|78363...	179.0	[0..3]	[218..112]
gi\|91227377, gi\|... - gi\|91227377\|ref\|ZP_01261766.1\| Mrp protein [Vibrio alginolyticus 12G01], gi\|91188641\|gb\|EAS74931.1\| ...	179.0	[0..3]	[221..97]
gi\|113873961, gi... - gi\|150395667\|ref\|YP_001326134.1\| hypothetical protein Smed_0442 [Sinorhizobium medicae WSM419], gi\|1...	179.0	[0..3]	[222..124]
gi\|88928045, gi\|... - gi\|88948155\|ref\|ZP_01150918.1\| probable mrp protein ATP-binding [Halorhodospira halophila SL1], gi\|8...	179.0	[0..3]	[222..130]
gi\|90418466, gi\|... - gi\|90418466\|ref\|ZP_01226378.1\| Mrp-related protein [Aurantimonas sp. SI85-9A1], gi\|90338138\|gb\|EAS51... gi\|90418466, gi\|... - gi\|90418466\|ref\|ZP_01226378.1\| Mrp-related protein [Aurantimonas sp. SI85-9A1], gi\|90338138\|gb\|EAS51...	179.0	[0..3]	[220..128]
gi\|15073761 - gi\|15073761\|emb\|CAC45402.1\| Putative MRP protein homolog ATP-binding [Sinorhizobium meliloti 1021] gi\|15964583 - gi\|15964583\|ref\|NP_384936.1\| putative MRP protein homolog ATP-binding [Sinorhizobium meliloti 1021]	179.0	[0..3]	[222..124]
gi\|254229864, gi... - gi\|75855825\|ref\|ZP_00763466.1\| COG0489: ATPases involved in chromosome partitioning [Vibrio sp. Ex25...	178.0	[0..3]	[221..97]
gi\|82947427, gi\|... - gi\|83312586\|ref\|YP_422850.1\| ATPase involved in chromosome partitioning [Magnetospirillum magneticum...	178.0	[0..3]	[222..132]

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Predicted Domain #1

Region A:
Residues: [1-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKRYFVTGTD TEVGKTVASC ALLQAAKAAG YRTAGYKPVA SGSEKTPEGL RNSDALALQR  60
   61 NSSLQLDYAT VNPYTFAEPT SPHIISAQEG RPIESLVMSA GLRALEQQAD WVLVEGAGGW 120
  121 FTPLSDTFTF ADWVTQEQLP VILVVGVKLG CINHAMLTAQ VIQHAGLTLA GWVANDVTPP 180
  181 GKRHAEYMTT LTRMIPAPLL GEIPWLAENP ENAATGKYIN LALL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.39794
Match:	1a82A
Description:	DETHIOBIOTIN SYNTHETASE FROM ESCHERICHIA COLI, COMPLEX WITH SUBSTRATES ATP AND DIAMINOPELARGONIC ACID
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.37148167194523	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: