YRC Public Data Repository - Protein Structure Prediction

Protein:	BFD_ECOLI
Organism:	Escherichia coli
Length:	64 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BFD_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|83770637 - gi\|83770637\|dbj\|BAE60770.1\| unnamed protein product [Aspergillus oryzae] gi\|169763418 - gi\|169763418\|ref\|XP_001727609.1\| hypothetical protein [Aspergillus oryzae RIB40]	86.0	[0..3]	[60..497]
gi\|52002141, gi\|... - gi\|52784304\|ref\|YP_090133.1\| hypothetical protein BLi00484 [Bacillus licheniformis ATCC 14580], gi\|5...	85.0	[0..2]	[64..418]
gi\|46128049, gi\|... - gi\|46128049\|ref\|XP_388578.1\| hypothetical protein FG08402.1 [Gibberella zeae PH-1], gi\|42548311\|gb\|E...	85.0	[0..3]	[60..457]
gi\|25486625 - pir\|\|E83726 assimilatory nitrite reductase (subunit) nasD [imported] - Bacillus halodurans (strain C... gi\|10173227, gi\|... - gi\|15613176\|ref\|NP_241479.1\| assimilatory nitrite reductase (subunit) [Bacillus halodurans C-125], g...	85.0	[0..3]	[62..418]
gi\|3378501, gi\|3... - gi\|3378501\|emb\|CAA08858.1\| nitrite reductase [Phaeosphaeria nodorum], gi\|3378498\|emb\|CAA08856.1\| nit...	85.0	[0..3]	[60..521]
NIR_EMENI - Nitrite reductase [NAD(P)H] OS=Emericella nidulans GN=niiA PE=3 SV=1	84.0	[0..3]	[60..499]
NIR_EMENI - Nitrite reductase [NAD(P)H] OS=Emericella nidulans GN=niiA PE=3 SV=2 NIR_EMENI - Nitrite reductase [NAD(P)H] OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL ...	84.0	[0..3]	[60..499]
gi\|111065967 - gi\|111065967\|gb\|EAT87087.1\| hypothetical protein SNOG_06023 [Phaeosphaeria nodorum SN15]	84.0	[0..3]	[60..521]
gi\|88177519, gi\|... - gi\|88177519\|gb\|EAQ84987.1\| hypothetical protein CHGG_09001 [Chaetomium globosum CBS 148.51], gi\|1162...	84.0	[0..3]	[60..476]
gi\|114650032 - gi\|114650032\|dbj\|BAF31848.1\| nitrite reductase [Fusarium oxysporum]	84.0	[0..3]	[60..458]

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Predicted Domain #1

Region A:
Residues: [1-64]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYVCLCNGIS DKKIRQAVRQ FSPHSFQQLK KFIPVGNQCG KCVRAAREVM EDELMQLPEF  60
   61 KESA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.965
Match:	1vq0A
Description:	Crystal structure of 33 kDa chaperonin (Heat shock protein 33 homolog) (HSP33) (TM1394) from Thermotoga maritima at 2.20 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits