YRC Public Data Repository - Protein Structure Prediction

Protein:	BETT_ECOLI
Organism:	Escherichia coli
Length:	677 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BETT_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|237707687, gi... - gi\|237707687\|ref\|ZP_04538168.1\| high-affinity choline transporter [Escherichia sp. 3_2_53FAA], gi\|22... gi\|115511719, gi... - gi\|117622595\|ref\|YP_851508.1\| choline transport protein BetT [Escherichia coli APEC O1], gi\|11551171... gi\|215263497, gi... - gi\|215485425\|ref\|YP_002327856.1\| choline transport protein BetT [Escherichia coli O127:H6 str. E2348... gi\|91209389, gi\|... - gi\|91209389\|ref\|YP_539375.1\| choline transport protein BetT [Escherichia coli UTI89], gi\|91070963\|gb... gi\|218364008, gi... - gi\|218557239\|ref\|YP_002390152.1\| choline transport protein BetT [Escherichia coli S88], gi\|218364008...	856.0	[0..1]	[677..1]
gi\|26246332, gi\|... - gi\|26246332\|ref\|NP_752371.1\| choline transport protein BetT [Escherichia coli CFT073], gi\|26106730\|g... gi\|227884667, gi... - gi\|227884667\|ref\|ZP_04002472.1\| choline transport protein BetT [Escherichia coli 83972], gi\|22783826...	856.0	[0..1]	[677..1]
gi\|191173584, gi... - gi\|191173584\|ref\|ZP_03035110.1\| transporter, betaine/carnitine/choline transporter (BCCT) family [Es... gi\|110640595, gi... - gi\|110640595\|ref\|YP_668323.1\| choline transport protein BetT [Escherichia coli 536], gi\|110342187\|gb...	855.0	[0..1]	[677..1]
gi\|110613932, gi... - gi\|110804384\|ref\|YP_687904.1\| choline transport protein BetT [Shigella flexneri 5 str. 8401], gi\|110...	845.0	[0..1]	[677..1]
gi\|26990662, gi\|... - gi\|26990662\|ref\|NP_746087.1\| choline/carnitine/betaine transporter family protein [Pseudomonas putid... tr\|E4RG06\|E4RG06... - Choline/carnitine/betaine transporter family protein OS=Pseudomonas putida (strain BIRD-1) GN=PPUBIR...	842.0	[0..3]	[664..1]
gi\|218894394, gi... - gi\|218894394\|ref\|YP_002443264.1\| putative choline transporter [Pseudomonas aeruginosa LESB58], gi\|21... gi\|194548998, gi... - gi\|84317840\|ref\|ZP_00966275.1\| COG1292: Choline-glycine betaine transporter [Pseudomonas aeruginosa ... gi\|11351182 - pir\|\|G82985 probable choline transporter PA5291 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|53726738, gi\|... - gi\|53726738\|ref\|ZP_00141772.2\| COG1292: Choline-glycine betaine transporter [Pseudomonas aeruginosa ... gi\|107104392 - gi\|107104392\|ref\|ZP_01368310.1\| hypothetical protein PaerPA_01005468 [Pseudomonas aeruginosa PACS2] gi\|15600484, gi\|... - gi\|9951605\|gb\|AAG08676.1\|AE004941_9 probable choline transporter [Pseudomonas aeruginosa PAO1], gi\|1...	836.0	[0..3]	[665..1]
gi\|194554807, gi... - gi\|84324003\|ref\|ZP_00972068.1\| COG1292: Choline-glycine betaine transporter [Pseudomonas aeruginosa ...	836.0	[0..3]	[665..1]
gi\|75238499 - gi\|75238499\|ref\|ZP_00722493.1\| COG1292: Choline-glycine betaine transporter [Escherichia coli F11]	834.0	[0..17]	[677..2]
gi\|75194535 - gi\|75194535\|ref\|ZP_00704605.1\| COG1292: Choline-glycine betaine transporter [Escherichia coli HS] gi\|75189386 - gi\|75189386\|ref\|ZP_00702653.1\| COG1292: Choline-glycine betaine transporter [Escherichia coli E24377... gi\|83586352 - gi\|83586352\|ref\|ZP_00924987.1\| COG1292: Choline-glycine betaine transporter [Escherichia coli 101-1]	834.0	[0..17]	[677..2]
gi\|75231133 - gi\|75231133\|ref\|ZP_00717555.1\| COG1292: Choline-glycine betaine transporter [Escherichia coli B7A]	834.0	[0..17]	[677..2]

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Predicted Domain #1

Region A:
Residues: [1-94]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDLSHSREK DKINPVVFYT SAGLILLFSL TTILFRDFSA LWIGRTLDWV SKTFGWYYLL  60
   61 AATLYIVFVV CIACSRFGSV KLGPEQSKPE FSLL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [95-279]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SWAAMLFAAG IGIDLMFFSV AEPVTQYMQP PEGAGQTIEA ARQAMVWTLF HYGLTGWSMY  60
   61 ALMGMALGYF SYRYNLPLTI RSALYPIFGK RINGPIGHSV DIAAVIGTIF GIATTLGIGV 120
  121 VQLNYGLSVL FDIPDSMAAK AALIALSVII ATISVTSGVD KGIRVLSELN VALALGLILF 180
  181 VLFMG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [280-521]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DTSFLLNALV LNVGDYVNRF MGMTLNSFAF DRPVEWMNNW TLFFWAWWVA WSPFVGLFLA  60
   61 RISRGRTIRQ FVLGTLIIPF TFTLLWLSVF GNSALYEIIH GGAAFAEEAM VHPERGFYSL 120
  121 LAQYPAFTFS ASVATITGLL FYVTSADSGA LVLGNFTSQL KDINSDAPGW LRVFWSVAIG 180
  181 LLTLGMLMTN GISALQNTTV IMGLPFSFVI FFVMAGLYKS LKVEDYRRES ANRDTAPRPL 240
  241 GL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [522-677]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QDRLSWKKRL SRLMNYPGTR YTKQMMETVC YPAMEEVAQE LRLRGAYVEL KSLPPEEGQQ  60
   61 LGHLDLLVHM GEEQNFVYQI WPQQYSVPGF TYRARSGKST YYRLETFLLE GSQGNDLMDY 120
  121 SKEQVITDIL DQYERHLNFI HLHREAPGHS VMFPDA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits