YRC Public Data Repository - Protein Structure Prediction

Protein:	BCSB_ECOLI
Organism:	Escherichia coli
Length:	779 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BCSB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|26110595, gi\|... - gi\|26250166\|ref\|NP_756206.1\| cellulose synthase regulator protein [Escherichia coli CFT073], gi\|2611...	841.0	[0..1]	[763..30]
gi\|91213038, gi\|... - gi\|91213038\|ref\|YP_543024.1\| cellulose synthase regulator protein [Escherichia coli UTI89], gi\|91074...	839.0	[0..1]	[763..30]
gi\|110643779, gi... - gi\|110643779\|ref\|YP_671509.1\| cellulose synthase regulator protein [Escherichia coli 536], gi\|110345... gi\|190909213, gi... - gi\|191170405\|ref\|ZP_03031958.1\| cyclic di-GMP binding protein [Escherichia coli F11], gi\|190909213\|g... gi\|227839273, gi... - gi\|227883693\|ref\|ZP_04001498.1\| cellulose synthase regulator protein [Escherichia coli 83972], gi\|22...	838.0	[0..1]	[763..1]
gi\|115514939, gi... - gi\|117625815\|ref\|YP_859138.1\| cellulose synthase regulator protein [Escherichia coli APEC O1], gi\|11... gi\|215266881, gi... - gi\|215488809\|ref\|YP_002331240.1\| cellulose synthase regulator protein [Escherichia coli O127:H6 str.... gi\|218560608, gi... - gi\|218560608\|ref\|YP_002393521.1\| cellulose synthase regulator protein [Escherichia coli S88], gi\|218... gi\|218691816, gi... - gi\|218691816\|ref\|YP_002400028.1\| cellulose synthase regulator protein [Escherichia coli ED1a], gi\|21...	837.0	[0..1]	[763..1]
gi\|110807373, gi... - gi\|110807373\|ref\|YP_690893.1\| cellulose synthase regulator protein [Shigella flexneri 5 str. 8401], ...	834.0	[0..1]	[763..30]
gi\|82545896, gi\|... - gi\|82545896\|ref\|YP_409843.1\| cellulose synthase regulator protein [Shigella boydii Sb227], gi\|812473...	833.0	[0..1]	[763..1]
gi\|73857692, gi\|... - gi\|74314215\|ref\|YP_312634.1\| cellulose synthase regulator protein [Shigella sonnei Ss046], gi\|738576...	831.0	[0..1]	[763..1]
gi\|466670\|gb\|AAB... - unnamed protein product [Escherichia coli] gi\|466670 - gi\|466670\|gb\|AAB18509.1\| unnamed protein product [Escherichia coli str. K-12 substr. MG1655]	831.0	[0..1]	[763..1]
gi\|82779563, gi\|... - gi\|82779563\|ref\|YP_405912.1\| cellulose synthase regulator protein [Shigella dysenteriae Sd197], gi\|8...	829.0	[0..1]	[763..1]
gi\|83571341 - gi\|83571341\|ref\|ZP_00922781.1\| hypothetical protein Sdys1_01000045 [Shigella dysenteriae 1012]	824.0	[0..13]	[779..1]

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Predicted Domain #1

Region A:
Residues: [1-241]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRKLFWICA VAMGMSAFPS FMTQATPATQ PLINAEPAVA AQTEQNPQVG QVMPGVQGAD  60
   61 APVVAQNGPS RDVKLTFAQI APPPGSMVLR GINPNGSIEF GMRSDEVVTK AMLNLEYTPS 120
  121 PSLLPVQSQL KVYLNDELMG VLPVTKEQLG KKTLAQMPIN PLFISDFNRV RLEFVGHYQD 180
  181 VCEKPASTTL WLDVGRSSGL DLTYQTLNVK NDLSHFPVPF FDPSDNRTNT LPMVFAGAPD 240
  241 V

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [242-404]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLQQASAIVA SWFGSRSGWR GQNFPVLYNQ LPDRNAIVFA TNDKRPDFLR DHPAVKAPVI  60
   61 EMINHPQNPY VKLLVVFGRD DKDLLQAAKG IAQGNILFRG ESVVVNEVKP LLPRKPYDAP 120
  121 NWVRTDRPVT FGELKTYEEQ LQSSGLEPAA INVSLNLPPD LYL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [405-476]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSTGIDMDI NYRYTMPPVK DSSRMDISLN NQFLQSFNLS SKQEANRLLL RIPVLQGLLD  60
   61 GKTDVSIPAL KL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [477-669]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GATNQLRFDF EYMNPMPGGS VDNCITFQPV QNHVVIGDDS TIDFSKYYHF IPMPDLRAFA  60
   61 NAGFPFSRMA DLSQTITVMP KAPNEAQMET LLNTVGFIGA QTGFPAINLT VTDDGSTIQG 120
  121 KDADIMIIGG IPDKLKDDKQ IDLLVQATES WVKTPMRQTP FPGIVPDESD RAAETRSTLT 180
  181 SSGAMAAVIG FQS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [670-779]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PYNDQRSVIA LLADSPRGYE MLNDAVNDSG KRATMFGSVA VIRESGINSL RVGDVYYVGH  60
   61 LPWFERVWYA LANHPILLAV LAAISVILLA WVLWRLLRII SRRRLNPDNE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits