YRC Public Data Repository - Protein Structure Prediction

Protein:	BASS_ECOLI
Organism:	Escherichia coli
Length:	363 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BASS_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|166853488, gi... - gi\|167039248\|ref\|YP_001662233.1\| integral membrane sensor signal transduction histidine kinase [Ther... gi\|241904558, gi... - gi\|241904558\|ref\|ZP_04789245.1\| histidine kinase [Thermoanaerobacter brockii subsp. finnii Ako-1], g... gi\|76588655, gi\|... - gi\|76795887\|ref\|ZP_00778257.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	246.0	[0..33]	[353..138]
gi\|20808918 - gi\|20808918\|ref\|NP_624089.1\| Sensory transduction histidine kinase [Thermoanaerobacter tengcongensis... gi\|20808918, gi\|... - gi\|20808918\|ref\|NP_624089.1\| sensory transduction histidine kinase [Thermoanaerobacter tengcongensis...	242.0	[0..29]	[358..133]
gi\|45358866, gi\|... - gi\|45358866\|ref\|NP_988423.1\| sensory transduction histidine kinase [Methanococcus maripaludis S2], g...	237.0	[0..23]	[357..272]
gi\|77995587, gi\|... - gi\|78043472\|ref\|YP_360244.1\| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901], gi\|...	234.0	[0..33]	[360..138]
gi\|89897368, gi\|... - gi\|89897368\|ref\|YP_520855.1\| hypothetical protein DSY4622 [Desulfitobacterium hafniense Y51], gi\|893...	227.0	[0..32]	[355..136]
gi\|52144035, gi\|... - gi\|52144035\|ref\|YP_082793.1\| sensor histidine kinase [Bacillus cereus E33L], gi\|51977504\|gb\|AAU19054...	226.0	[0..11]	[360..106]
gi\|88924243, gi\|... - gi\|88946215\|ref\|ZP_01149300.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	225.0	[0..33]	[357..142]
gi\|49331784, gi\|... - gi\|49480228\|ref\|YP_034908.1\| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. ...	225.0	[0..36]	[354..128]
gi\|67849842, gi\|... - gi\|67916175\|ref\|ZP_00509894.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	225.0	[0..29]	[355..131]
gi\|218540301, gi... - gi\|218848250\|ref\|YP_002455135.1\| sensor histidine kinase [Bacillus cereus AH820], gi\|218540301\|gb\|AC... gi\|229164673, gi... - gi\|229164673\|ref\|ZP_04292537.1\| hypothetical protein bcere0009_53880 [Bacillus cereus R309803], gi\|2... gi\|116585027, gi... - gi\|190015346\|ref\|YP_001967073.1\| sensor histidine kinase [Bacillus cereus], gi\|190015080\|ref\|YP_0019... gi\|44004552, gi\|... - gi\|44004552\|ref\|NP_982221.1\| sensor histidine kinase [Bacillus cereus ATCC 10987], gi\|42741618\|gb\|AA...	224.0	[0..37]	[353..129]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHFLRRPISL RQRLILTIGA ILLVFELISV FWLWHESTEQ IQLFEQALRD NRNNDRHIMR  60
   61 EIREAVASLI VPGVFMVSLT LFICYQAVRR ITRPLAELQK ELEARTADNL TPIAIHSA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.41
Match:	2f95B
Description:	M intermediate structure of sensory rhodopsin II/transducer complex in combination with the ground state structure
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [119-363]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLEIEAVVSA LNDLVSRLTS TLDNERLFTA DVAHELRTPL AGVRLHLELL AKTHHIDVAP  60
   61 LVARLDQMME SVSQLLQLAR AGQSFSSGNY QHVKLLEDVI LPSYDELSTM LDQRQQTLLL 120
  121 PESAADITVQ GDATLLRMLL RNLVENAHRY SPQGSNIMIK LQEDDGAVMA VEDEGPGIDE 180
  181 SKCGELSKAF VRMDSRYGGI GLGLSIVSRI TQLHHGQFFL QNRQETSGTR AWVRLKKDQY 240
  241 VANQI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.221849
Match:	2c2aA
Description:	Structure of the entire cytoplasmic portion of a sensor histidine kinase protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits