YRC Public Data Repository - Protein Structure Prediction

Protein:	BRP44L
Organism:	Homo sapiens
Length:	109 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BRP44L.

Description	E-value	Query Range	Subject Range
MPC1_RAT - Mitochondrial pyruvate carrier 1 OS=Rattus norvegicus GN=Mpc1 PE=3 SV=1 MPC1_MOUSE - Mitochondrial pyruvate carrier 1 OS=Mus musculus GN=Mpc1 PE=1 SV=1	176.0	[0..1]	[109..1]
gi\|73945789, gi\|... - gi\|73945793\|ref\|XP_863111.1\| PREDICTED: similar to Brain protein 44-like protein isoform 5 [Canis fa...	174.0	[0..1]	[109..1]
MPC1_BOVIN - Mitochondrial pyruvate carrier 1 OS=Bos taurus GN=MPC1 PE=1 SV=1	174.0	[0..1]	[109..1]
gi\|114610222 - gi\|114610222\|ref\|XP_001137474.1\| PREDICTED: brain protein 44-like [Pan troglodytes]	174.0	[0..1]	[109..1]
gi\|4929727 - gi\|4929727\|gb\|AAD34124.1\|AF151887_1 CGI-129 protein [Homo sapiens]	172.0	[0..1]	[109..1]
gi\|53134979 - gi\|53134979\|emb\|CAG32383.1\| hypothetical protein [Gallus gallus]	169.0	[0..1]	[106..1]
gi\|148235923, gi... - gi\|56541218\|gb\|AAH87474.1\| LOC496160 protein [Xenopus laevis], gi\|148235923\|ref\|NP_001088849.1\| hypo...	168.0	[0..1]	[106..1]
gi\|50416693, gi\|... - gi\|89272007\|emb\|CAJ82200.1\| brain protein 44-like [Xenopus tropicalis], gi\|55741964\|ref\|NP_001006893... gi\|55741964 - ref\|NP_001006893.1\| brain protein 44-like [Xenopus tropicalis]	167.0	[0..1]	[106..1]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGALVRKAA DYVRSKDFRD YLMSTHFWGP VANWGLPIAA INDMKKSPEI ISGRMTFALC  60
   61 CYSLTFMRFA YKVQPRNWLL FACHATNEVA QLIQGGRLIK HEMTKTASA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	36.49485
Match:	PF03650.4
Description:	No description for PF03650.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.963	N/A	N/A	a.29.16	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits