YRC Public Data Repository - Protein Structure Prediction

Protein:	ATPE_TOBAC
Organism:	Nicotiana tabacum
Length:	133 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATPE_TOBAC.

Description	E-value	Query Range	Subject Range
ATPE_SPIOL - ATP synthase epsilon chain, chloroplastic OS=Spinacia oleracea GN=atpE PE=1 SV=1	173.0	[0..1]	[133..1]
ATPE_JASNU - ATP synthase epsilon chain, chloroplastic OS=Jasminum nudiflorum GN=atpE PE=3 SV=1	173.0	[0..1]	[133..1]
gi\|110456644 - gi\|110456644\|gb\|ABG74763.1\| ATPase epsilon subunit [Jasminum leratii]	172.0	[0..1]	[133..1]
gi\|110456681 - gi\|110456681\|gb\|ABG74790.1\| ATPase epsilon subunit [Jasminum abyssinicum]	172.0	[0..1]	[133..1]
ATPE_NYMAL - ATP synthase epsilon chain, chloroplastic OS=Nymphaea alba GN=atpE PE=3 SV=1	171.0	[0..1]	[133..1]
gi\|110456713 - gi\|110456713\|gb\|ABG74816.1\| ATPase epsilon subunit [Jasminum subhumile]	171.0	[0..1]	[133..1]
gi\|110456745 - gi\|110456745\|gb\|ABG74840.1\| ATPase epsilon subunit [Menodora longiflora]	170.0	[0..1]	[133..1]
ATPE_GOSHI - ATP synthase epsilon chain, chloroplastic OS=Gossypium hirsutum GN=atpE PE=3 SV=1 ATPE_GOSBA - ATP synthase epsilon chain, chloroplastic OS=Gossypium barbadense GN=atpE PE=3 SV=1	170.0	[0..1]	[133..1]
ATPE_PIPCE - ATP synthase epsilon chain, chloroplastic OS=Piper cenocladum GN=atpE PE=3 SV=1	170.0	[0..1]	[133..1]
gi\|110456610 - gi\|110456610\|gb\|ABG74737.1\| ATPase epsilon subunit [Forsythia europaea]	170.0	[0..1]	[133..1]

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Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLNLSVLTP NRIVWDSEVE EIVLSTNSGQ IGILPNHAPI ATAVDIGILR IRLNDQWLTM  60
   61 ALMGGFARIG NNEITVLVND AEKGSDIDPQ EAQQTLELAE ANVKKAEGRR QKIEANLALR 120
  121 RARTRVEAIN PIS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.39794
Match:	2e5yA
Description:	No description for 2e5yA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits