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View Structure Prediction Details

Protein: ATPE_PSINU
Organism: Psilotum nudum
Length: 133 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATPE_PSINU.

Description E-value Query
Range		 Subject
Range
ATPE_SPIOL - ATP synthase epsilon chain, chloroplastic OS=Spinacia oleracea GN=atpE PE=1 SV=1
 163.0 [0..2] [132..3]
ATPE_MORIN - ATP synthase epsilon chain, chloroplastic OS=Morus indica GN=atpE PE=3 SV=1
 162.0 [0..2] [132..3]
gi|22796294 - gi|22796294|emb|CAD23967.1| ATP synthase epsilon subunit [Grevea sp. Thulin et al. s.n.]
 162.0 [0..2] [132..2]
ATPE_NYMAL - ATP synthase epsilon chain, chloroplastic OS=Nymphaea alba GN=atpE PE=3 SV=1
 162.0 [0..2] [132..3]
ATPE_JASNU - ATP synthase epsilon chain, chloroplastic OS=Jasminum nudiflorum GN=atpE PE=3 SV=1
 161.0 [0..2] [132..3]
gi|110456644 - gi|110456644|gb|ABG74763.1| ATPase epsilon subunit [Jasminum leratii]
 161.0 [0..2] [132..3]
gi|110456681 - gi|110456681|gb|ABG74790.1| ATPase epsilon subunit [Jasminum abyssinicum]
 161.0 [0..2] [132..3]
ATPE_PIPCE - ATP synthase epsilon chain, chloroplastic OS=Piper cenocladum GN=atpE PE=3 SV=1
 161.0 [0..2] [132..3]
ATPE_GOSHI - ATP synthase epsilon chain, chloroplastic OS=Gossypium hirsutum GN=atpE PE=3 SV=1
ATPE_GOSBA - ATP synthase epsilon chain, chloroplastic OS=Gossypium barbadense GN=atpE PE=3 SV=1
 160.0 [0..2] [132..3]
gi|69215466, gi|... - gi|85540810|gb|ABC70762.1| ATP synthase CF1 epsilon subunit [Ranunculus macranthus], gi|69215466|gb|...
 160.0 [0..2] [131..3]

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Predicted Domain #1
Region A:
Residues: [1-133] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNLRVIAPN RIVWNSEVRE IILSTNNGQM GILPNHAPLL TALDIGVMKI RIDERWSNMA  60
   61 LMGGFATIDN NQITILVNEA EKSSEIDPEE AQETFQKAQA NLTRAEGKRK TIEAHLAFKR 120
  121 AKARLEAINV TQE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.045757
Match: 1aqtA
Description: EPSILON SUBUNIT OF F1F0-ATP SYNTHASE FROM ESCHERICHIA COLI
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle