YRC Public Data Repository - Protein Structure Prediction

Protein:	ATPE_ANTFO
Organism:	Anthoceros formosae
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATPE_ANTFO.

Description	E-value	Query Range	Subject Range
ATPE_SPIOL - ATP synthase epsilon chain, chloroplastic OS=Spinacia oleracea GN=atpE PE=1 SV=1	171.0	[0..1]	[134..1]
ATPE_JASNU - ATP synthase epsilon chain, chloroplastic OS=Jasminum nudiflorum GN=atpE PE=3 SV=1	171.0	[0..1]	[133..1]
gi\|110456644 - gi\|110456644\|gb\|ABG74763.1\| ATPase epsilon subunit [Jasminum leratii]	171.0	[0..1]	[133..1]
ATPE_NYMAL - ATP synthase epsilon chain, chloroplastic OS=Nymphaea alba GN=atpE PE=3 SV=1	170.0	[0..1]	[133..1]
gi\|110456681 - gi\|110456681\|gb\|ABG74790.1\| ATPase epsilon subunit [Jasminum abyssinicum]	170.0	[0..1]	[133..1]
ATPE_PIPCE - ATP synthase epsilon chain, chloroplastic OS=Piper cenocladum GN=atpE PE=3 SV=1	169.0	[0..1]	[133..1]
gi\|69215466, gi\|... - gi\|85540810\|gb\|ABC70762.1\| ATP synthase CF1 epsilon subunit [Ranunculus macranthus], gi\|69215466\|gb\|...	169.0	[0..1]	[132..1]
gi\|110456713 - gi\|110456713\|gb\|ABG74816.1\| ATPase epsilon subunit [Jasminum subhumile]	169.0	[0..1]	[133..1]
ATPE_GOSHI - ATP synthase epsilon chain, chloroplastic OS=Gossypium hirsutum GN=atpE PE=3 SV=1 ATPE_GOSBA - ATP synthase epsilon chain, chloroplastic OS=Gossypium barbadense GN=atpE PE=3 SV=1	169.0	[0..1]	[133..1]
ATPE_MORIN - ATP synthase epsilon chain, chloroplastic OS=Morus indica GN=atpE PE=3 SV=1	169.0	[0..1]	[133..1]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLNLRVMAP NRIVWNSEVE EIVLSTNSGQ IGVLPNHAPL LTALDIGIIK IRLNGEWSTM  60
   61 ALMGGFAMID NNGMTILVNE AEKATEINPQ EARENYKMAQ KDLAKAEGGK QKIEANLAFK 120
  121 RAKARLEAID VISFPVSN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.39794
Match:	1bshA
Description:	Epsilon subunit of F1F0-ATP synthase C-terminal domain; Epsilon subunit of F1F0-ATP synthase N-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits