YRC Public Data Repository - Protein Structure Prediction

Protein:	ATP8_KLULA
Organism:	Kluyveromyces lactis
Length:	48 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATP8_KLULA.

Description	E-value	Query Range	Subject Range
gi\|57161735\|emb\|... - putative ATP synthase, subunit 8 [Kluyveromyces thermotolerans], putative ATP synthase, subunit 8 [K... gi\|57161735, gi\|... - gi\|57790529\|ref\|YP_184724.1\| putative ATP synthase, subunit 8 [Kluyveromyces thermotolerans], gi\|571...	51.0	[0..1]	[48..1]
gi\|152030928 - gi\|152030928\|gb\|ABS28691.1\| ATP synthase F0 subunit 8 [Saccharomyces cerevisiae YJM789] gi\|208901 - gi\|208901\|gb\|AAA72779.1\| mitochondrial ATPase subunit 8 gi\|4588693 - gi\|4588693\|gb\|AAD26180.1\|AF114936_1 ATP synthase subunit 8 [Saccharomyces sp. IFO 1815] ATP8 - Subunit 8 of the F0 sector of mitochondrial inner membrane F1-F0 ATP synthase, encoded on the mitoch... gi\|4588698 - gi\|4588698\|gb\|AAD26182.1\|AF114939_1 ATP synthase subunit 8 [Saccharomyces sp. URFJ 50791] gi\|4588690 - gi\|4588690\|gb\|AAD26179.1\|AF114934_1 ATP synthase subunit 8 [Saccharomyces sp. S6U] gi\|6797720 - gi\|6797720\|gb\|AAD26169.3\|AF114912_1 ATP synthase subunit 8 [Saccharomyces sp. IFO 1802] ATP8_YEAST - ATP synthase protein 8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATP8 PE=3 SV=1 gi\|6797716, gi\|6... - gi\|6797721\|gb\|AAD26168.3\|AF114909_1 ATP synthase subunit 8 [Saccharomyces paradoxus], gi\|6797716\|gb\|... gi\|6797723 - gi\|6797723\|gb\|AAD26166.3\|AF114905_1 ATP synthase subunit 8 [Saccharomyces sp. CID1]	51.0	[0..1]	[48..1]
gi\|21263116, gi\|... - gi\|21263116\|ref\|NP_644683.1\| ATP synthase subunit 8 [Saccharomyces castellii], gi\|21105289\|gb\|AAM345...	51.0	[0..1]	[48..1]
gi\|6797726, gi\|6... - gi\|6797726\|gb\|AAD26163.3\|AF114899_1 ATP synthase subunit 8 [Saccharomyces bayanus], gi\|6797712\|gb\|AA...	50.0	[0..1]	[48..1]
gi\|224588078, gi... - gi\|224588078\|ref\|YP_002640606.1\| ATP synthase F0 subunit 8 [Saccharomyces pastorianus Weihenstephan ... gi\|6797718, gi\|6... - gi\|6797724\|gb\|AAD26165.3\|AF114903_1 ATP synthase subunit 8 [Saccharomyces pastorianus], gi\|6797718\|g...	50.0	[0..1]	[48..1]

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Predicted Domain #1

Region A:
Residues: [1-48]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQLVPFYFL NQLVYGFALV TILLVLFAQY FLPQILRLYV SRLFISKL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.623	a.8.1	Bacterial immunoglobulin/albumin-binding domains
View	Download	0.583	a.7.17	Description not found.
View	Download	0.553	a.7.17	Description not found.
View	Download	0.534	a.8.1	Bacterial immunoglobulin/albumin-binding domains
View	Download	0.507	a.10.2	Description not found.
View	Download	0.307	a.5.1	DNA helicase RuvA subunit, C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits