YRC Public Data Repository - Protein Structure Prediction

Protein:	ATP5E_MAIZE
Organism:	Zea mays
Length:	70 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATP5E_MAIZE.

Description	E-value	Query Range	Subject Range
ATP5E_ARATH - ATP synthase subunit epsilon, mitochondrial OS=Arabidopsis thaliana GN=At1g51650 PE=1 SV=3	107.0	[0..3]	[70..2]
ATP5E_IPOBA - ATP synthase subunit epsilon, mitochondrial OS=Ipomoea batatas PE=1 SV=2	106.0	[0..3]	[70..2]
gi\|55243554, gi\|... - gi\|58380900\|ref\|XP_310858.2\| ENSANGP00000012584 [Anopheles gambiae str. PEST], gi\|55243554\|gb\|EAA067...	104.0	[0..5]	[63..27]
gi\|50942951, gi\|... - gi\|50942951\|ref\|XP_481003.1\| putative ATP synthase epsilon chain, mitochondrial [Oryza sativa (japon...	104.0	[0..1]	[66..1]
gi\|21068676 - gi\|21068676\|emb\|CAD31844.1\| putative epsilon subunit of mitochondrial F1-ATPase [Cicer arietinum]	104.0	[0..3]	[67..2]
gi\|25044815 - gi\|25044815\|gb\|AAM28278.1\| ATP synthase epsilon subunit [Ananas comosus]	95.0	[0..9]	[69..15]
gi\|88179518, gi\|... - gi\|88179518\|gb\|EAQ86986.1\| hypothetical protein CHGG_08239 [Chaetomium globosum CBS 148.51], gi\|1162...	92.0	[0..5]	[69..520]
gi\|157104383, gi... - gi\|157104383\|ref\|XP_001648383.1\| hypothetical protein AaeL_AAEL004060 [Aedes aegypti], gi\|108880367\|...	92.0	[0..8]	[61..1]

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Predicted Domain #1

Region A:
Residues: [1-70]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSATTAAVPF WRAAGMTYIG YSNICAALVR NCLKEPFKSE AASREKVHFS ISKWTDGKQE  60
   61 KPTVRTESDD

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Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.697	a.5.3	N-terminal domain of phosphatidylinositol transfer protein sec14p
View	Download	0.651	a.5.3	N-terminal domain of phosphatidylinositol transfer protein sec14p
View	Download	0.592	a.5.3	N-terminal domain of phosphatidylinositol transfer protein sec14p
View	Download	0.519	a.179.1	Replisome organizer (g39p helicase loader/inhibitor protein)
View	Download	0.519	a.179.1	Replisome organizer (g39p helicase loader/inhibitor protein)
View	Download	0.511	a.5.1	DNA helicase RuvA subunit, C-terminal domain
View	Download	0.511	a.5.1	DNA helicase RuvA subunit, C-terminal domain
View	Download	0.437	a.5.1	DNA helicase RuvA subunit, C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits