YRC Public Data Repository - Protein Structure Prediction

Protein:	ATOA_ECOLI
Organism:	Escherichia coli
Length:	216 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATOA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|115379577, gi... - gi\|115379577\|ref\|ZP_01466665.1\| succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B [Stigmatell...	231.0	[0..3]	[212..4]
gi\|108756835, gi... - gi\|108756835\|ref\|YP_631971.1\| 3-oxoacid CoA-transferase subunit B [Myxococcus xanthus DK 1622], gi\|1...	226.0	[0..3]	[212..4]
gi\|94968193, gi\|... - gi\|94968193\|ref\|YP_590241.1\| butyryl-CoA:acetate CoA transferase [Candidatus Koribacter versatilis E...	224.0	[0..2]	[213..14]
gi\|77975856 - gi\|77975856\|ref\|ZP_00831390.1\| COG2057: Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Y...	218.0	[0..1]	[216..1]
gi\|115313679, gi... - gi\|182889136\|gb\|AAI64688.1\| Oxct1b protein [Danio rerio], gi\|116004513\|ref\|NP_001070618.1\| 3-oxoacid...	218.0	[0..3]	[214..309]
gi\|56478100, gi\|... - gi\|56478100\|ref\|YP_159689.1\| succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B [Aromatoleum a...	218.0	[0..3]	[207..4]
gi\|83853110, gi\|... - gi\|83858287\|ref\|ZP_00951809.1\| 3-oxoadipate CoA-transferase, beta subunit [Oceanicaulis alexandrii H...	217.0	[0..3]	[209..4]
gi\|66781233, gi\|... - gi\|94984916\|ref\|YP_604280.1\| 3-oxoacid CoA-transferase, subunit B [Deinococcus geothermalis DSM 1130...	216.0	[0..3]	[205..4]
gi\|15807735, gi\|... - gi\|6460542\|gb\|AAF12248.1\|AE001862_74 CoA transferase, subunit B [Deinococcus radiodurans R1], gi\|158... gi\|7471251 - pir\|\|E75600 butyrate-acetoacetate CoA-transferase (EC 2.8.3.9) large chain homolog DRA0067 [similari...	216.0	[0..3]	[204..4]
gi\|37527662, gi\|... - gi\|37527662\|ref\|NP_931006.1\| acetate CoA-transferase beta subunit (acetyl-CoA:acetoacetate CoA trans...	216.0	[0..1]	[216..1]

Back

Predicted Domain #1

Region A:
Residues: [1-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAKQRIARR VAQELRDGDI VNLGIGLPTM VANYLPEGIH ITLQSENGFL GLGPVTTAHP  60
   61 DLVNAGGQPC GVLPGAAMFD SAMSFALIRG GHIDACVLGG LQVDEEANLA NWVVPGKMVP 120
  121 GMGGAMDLVT GSRKVIIAME HCAKDGSAKI LRRCTMPLTA QHAVHMLVTE LAVFRFIDGK 180
  181 MWLTEIADGC DLATVRAKTE ARFEVAADLN TQRGDL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.045757
Match:	1m3eA
Description:	Succinate:CoA transferase, N-terminal domain; Succinate:CoA transferase, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
3-oxoacid CoA-transferase activity	2.22792536321983	bayes_pls_golite062009
catalytic activity	1.68776709414398	bayes_pls_golite062009
CoA-transferase activity	0.50782945985068	bayes_pls_golite062009
transferase activity, transferring sulfur-containing groups	0.18413827683017	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: