YRC Public Data Repository - Protein Structure Prediction

Protein:	ATMA_ECOLI
Organism:	Escherichia coli
Length:	898 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATMA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|30065471, gi\|... - gi\|30065471\|ref\|NP_839642.1\| magnesium-transporting ATPase MgtA [Shigella flexneri 2a str. 2457T], g... gi\|110617565, gi... - gi\|110808017\|ref\|YP_691537.1\| magnesium-transporting ATPase MgtA [Shigella flexneri 5 str. 8401], gi...	698.0	[0..1]	[898..1]
gi\|218561402, gi... - gi\|218561402\|ref\|YP_002394315.1\| magnesium-transporting ATPase MgtA [Escherichia coli S88], gi\|21836... gi\|218707851, gi... - gi\|218707851\|ref\|YP_002415370.1\| magnesium-transporting ATPase MgtA [Escherichia coli UMN026], gi\|21... gi\|209921739, gi... - gi\|209921739\|ref\|YP_002295823.1\| magnesium-transporting ATPase MgtA [Escherichia coli SE11], gi\|2099... gi\|226840371, gi... - gi\|254037265\|ref\|ZP_04871342.1\| magnesium-transporting ATPase MgtA [Escherichia sp. 1_1_43], gi\|2268... gi\|218363561, gi... - gi\|218556792\|ref\|YP_002389706.1\| magnesium-transporting ATPase MgtA [Escherichia coli IAI1], gi\|2183... gi\|75515479, gi\|... - gi\|75515479\|ref\|ZP_00737636.1\| COG0474: Cation transport ATPase [Escherichia coli 53638], gi\|1884922... gi\|193063654, gi... - gi\|75258344\|ref\|ZP_00729775.1\| COG0474: Cation transport ATPase [Escherichia coli E22], gi\|193063654... gi\|194426550, gi... - gi\|75212203\|ref\|ZP_00712243.1\| COG0474: Cation transport ATPase [Escherichia coli B171], gi\|19442655... gi\|75198093, gi\|... - gi\|75198093\|ref\|ZP_00708163.1\| COG0474: Cation transport ATPase [Escherichia coli HS], gi\|157163718\|... gi\|124500746, gi... - gi\|124528304\|ref\|ZP_01699628.1\| magnesium-translocating P-type ATPase [Escherichia coli B], gi\|12450... gi\|73858196, gi\|... - gi\|74314719\|ref\|YP_313138.1\| magnesium-transporting ATPase MgtA [Shigella sonnei Ss046], gi\|73858196... gi\|169756675, gi... - gi\|170021747\|ref\|YP_001726701.1\| magnesium-transporting ATPase MgtA [Escherichia coli ATCC 8739], gi...	698.0	[0..1]	[898..1]
gi\|81243452, gi\|... - gi\|82779304\|ref\|YP_405653.1\| magnesium-transporting ATPase MgtA [Shigella dysenteriae Sd197], gi\|812...	698.0	[0..1]	[898..1]
gi\|56384110, gi\|... - gi\|56480559\|ref\|NP_709959.2\| magnesium-transporting ATPase MgtA [Shigella flexneri 2a str. 301], gi\|...	698.0	[0..1]	[898..1]
gi\|15804833, gi\|... - gi\|15804833\|ref\|NP_290874.1\| magnesium-transporting ATPase MgtA [Escherichia coli O157:H7 EDL933], g... gi\|25290673 - gi\|25290673\|pir\|\|D86122 Mg2+ transport ATPase, P-type 1 [imported] - Escherichia coli (strain O157:H...	697.0	[0..1]	[898..1]
gi\|75188955, gi\|... - gi\|75188955\|ref\|ZP_00702222.1\| COG0474: Cation transport ATPase [Escherichia coli E24377A], gi\|15715...	697.0	[0..1]	[898..1]
gi\|191167248, gi... - gi\|75229613\|ref\|ZP_00716152.1\| COG0474: Cation transport ATPase [Escherichia coli B7A], gi\|191167248...	696.0	[0..1]	[898..1]
gi\|115515712, gi... - gi\|117626588\|ref\|YP_859911.1\| magnesium-transporting ATPase MgtA [Escherichia coli APEC O1], gi\|1155... gi\|26111580, gi\|... - gi\|26251148\|ref\|NP_757188.1\| magnesium-transporting ATPase MgtA [Escherichia coli CFT073], gi\|261115... gi\|91075370, gi\|... - gi\|91213796\|ref\|YP_543782.1\| magnesium-transporting ATPase MgtA [Escherichia coli UTI89], gi\|9107537... gi\|227886704, gi... - gi\|227886704\|ref\|ZP_04004509.1\| magnesium-transporting ATPase MgtA [Escherichia coli 83972], gi\|2278... gi\|237703918, gi... - gi\|237703918\|ref\|ZP_04534399.1\| magnesium-transporting ATPase MgtA [Escherichia sp. 3_2_53FAA], gi\|2...	696.0	[0..1]	[898..1]
gi\|75235449, gi\|... - gi\|75235449\|ref\|ZP_00719657.1\| COG0474: Cation transport ATPase [Escherichia coli E110019], gi\|19306...	696.0	[0..1]	[898..1]
gi\|83569385, gi\|... - gi\|83569385\|ref\|ZP_00920839.1\| COG0474: Cation transport ATPase [Shigella dysenteriae 1012], gi\|1944...	695.0	[0..1]	[898..1]

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Predicted Domain #1

Region A:
Residues: [1-898]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKEIFTRLI RHLPSRLVHR DPLPGAQQTV NTVVPPSLSA HCLKMAVMPE EELWKTFDTH  60
   61 PEGLNQAEVE SAREQHGENK LPAQQPSPWW VHLWVCYRNP FNILLTILGA ISYATEDLFA 120
  121 AGVIALMVAI STLLNFIQEA RSTKAADALK AMVSNTATVL RVINDKGENG WLEIPIDQLV 180
  181 PGDIIKLAAG DMIPADLRIL QARDLFVAQA SLTGESLPVE KAATTRQPEH SNPLECDTLC 240
  241 FMGTTVVSGT AQAMVIATGA NTWFGQLAGR VSEQESEPNA FQQGISRVSM LLIRFMLVMA 300
  301 PVVLLINGYT KGDWWEAALF ALSVAVGLTP EMLPMIVTST LARGAVKLSK QKVIVKHLDA 360
  361 IQNFGAMDIL CTDKTGTLTQ DKIVLENHTD ISGKTSERVL HSAWLNSHYQ TGLKNLLDTA 420
  421 VLEGTDEESA RSLASRWQKI DEIPFDFERR RMSVVVAENT EHHQLVCKGA LQEILNVCSQ 480
  481 VRHNGEIVPL DDIMLRKIKR VTDTLNRQGL RVVAVATKYL PAREGDYQRA DESDLILEGY 540
  541 IAFLDPPKET TAPALKALKA SGITVKILTG DSELVAAKVC HEVGLDAGEV VIGSDIETLS 600
  601 DDELANLAQR TTLFARLTPM HKERIVTLLK REGHVVGFMG DGINDAPALR AADIGISVDG 660
  661 AVDIAREAAD IILLEKSLMV LEEGVIEGRR TFANMLKYIK MTASSNFGNV FSVLVASAFL 720
  721 PFLPMLPLHL LIQNLLYDVS QVAIPFDNVD DEQIQKPQRW NPADLGRFMI FFGPISSIFD 780
  781 ILTFCLMWWV FHANTPETQT LFQSGWFVVG LLSQTLIVHM IRTRRVPFIQ SCASWPLMIM 840
  841 TVIVMIVGIA LPFSPLASYL QLQALPLSYF PWLVAILAGY MTLTQLVKGF YSRRYGWQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	142.0
Match:	1mhsA
Description:	Proton ATPase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits