YRC Public Data Repository - Protein Structure Prediction

Protein:	KDPC_AGRFC
Organism:	Agrobacterium tumefaciens str. C58
Length:	188 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KDPC_AGRFC.

Description	E-value	Query Range	Subject Range
ATKC_RHILO - Potassium-transporting ATPase C chain OS=Rhizobium loti GN=kdpC PE=3 SV=1 KDPC_RHILO - Potassium-transporting ATPase KdpC subunit OS=Rhizobium loti (strain MAFF303099) GN=kdpC PE=3 SV=1	292.0	[0..1]	[176..1]
ATKC_BRAJA - Potassium-transporting ATPase C chain OS=Bradyrhizobium japonicum GN=kdpC PE=3 SV=1 KDPC_BRADU - Potassium-transporting ATPase KdpC subunit OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM ...	292.0	[0..1]	[188..1]
KDPC_NITHX - Potassium-transporting ATPase KdpC subunit OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=k...	288.0	[0..1]	[188..1]
KDPC_XANP2 - Potassium-transporting ATPase KdpC subunit OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2...	288.0	[0..1]	[186..1]
KDPC_CALS4 - Potassium-transporting ATPase KdpC subunit OS=Caldanaerobacter subterraneus subsp. tengcongensis (st... gi\|223489007, gi... - gi\|254479185\|ref\|ZP_05092533.1\| K+-transporting ATPase, C subunit [Carboxydibrachium pacificum DSM 1... ATKC_THETN - Potassium-transporting ATPase C chain OS=Thermoanaerobacter tengcongensis GN=kdpC PE=3 SV=1	283.0	[0..1]	[183..1]
gi\|116255580, gi... - gi\|116255580\|ref\|YP_771413.1\| putative potassium-transporting ATPase c chain [Rhizobium leguminosaru...	282.0	[0..1]	[186..1]
KDPC_GEOMG - Potassium-transporting ATPase KdpC subunit OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 /...	279.0	[0..2]	[187..1]
KDPC_RHOP5 - Potassium-transporting ATPase KdpC subunit OS=Rhodopseudomonas palustris (strain BisA53) GN=kdpC PE=...	279.0	[0..1]	[188..1]
KDPC_BURXL - Potassium-transporting ATPase KdpC subunit OS=Burkholderia xenovorans (strain LB400) GN=kdpC PE=3 SV...	278.0	[0..1]	[184..1]
KDPC_GEOUR - Potassium-transporting ATPase KdpC subunit OS=Geobacter uraniireducens (strain Rf4) GN=kdpC PE=3 SV=...	277.0	[0..2]	[186..1]

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Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRQFRPALV LILATTAITG LAYPLGMTGL AQALFPVQAN GSMIEKDGKV VGSQLIGQAF  60
   61 TGETYFHGRP SAAGDGYNAA SSSGSNLGPT SAKLIDRVKT DYEAAKAENP AAEVPADLVT 120
  121 ASGSGLDPHV SPEAAYFQVP RVAKARGMDE TALRALVDRH VEAPELGFMG EPVVNILALN 180
  181 MALDAAGS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	84.283997
Match:	PF02669.6
Description:	No description for PF02669.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits