YRC Public Data Repository - Protein Structure Prediction

Protein:	AT5G3_RAT
Organism:	Rattus norvegicus
Length:	142 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AT5G3_RAT.

Description	E-value	Query Range	Subject Range
gi\|114581903 - gi\|114581903\|ref\|XP_525965.2\| PREDICTED: similar to mitochondrial ATP synthase subunit 9 precursor [...	4.0E-44	[1..142]	[140..281]
gi\|89268626, gi\|... - gi\|89268626\|emb\|CAJ83365.1\| atp5g3 [Xenopus tropicalis], gi\|52346088\|ref\|NP_001005087.1\| ATP synthas...	2.0E-34	[1..142]	[1..142]
gi\|50750427 - gi\|50750427\|ref\|XP_426577.1\| PREDICTED: similar to Cg1746-prov protein [Gallus gallus]	3.0E-34	[14..142]	[202..329]
AT5G3_BOVIN - ATP synthase F(0) complex subunit C3, mitochondrial OS=Bos taurus GN=ATP5G3 PE=2 SV=1	8.0E-34	[1..142]	[1..141]
gi\|74003411 - gi\|74003411\|ref\|XP_545225.2\| PREDICTED: similar to 5-hydroxytryptamine receptor 3 subunit C [Canis f...	2.0E-33	[1..128]	[1..127]
gi\|109096967 - gi\|109096967\|ref\|XP_001107007.1\| PREDICTED: ATP synthase, H+ transporting, mitochondrial F0 complex,...	2.0E-33	[1..142]	[58..198]
gi\|148230635, gi... - gi\|27371265\|gb\|AAH41245.1\| Cg1746-prov protein [Xenopus laevis], gi\|148230635\|ref\|NP_001080083.1\| AT...	3.0E-33	[1..142]	[1..142]
gi\|47115139 - gi\|47115139\|emb\|CAG28411.1\| ATP5G3 [Homo sapiens]	9.0E-33	[1..142]	[1..142]
AT5G3_PONPY - ATP synthase lipid-binding protein, mitochondrial precursor - Pongo pygmaeus (Orangutan) AT5G3_PONAB - ATP synthase F(0) complex subunit C3, mitochondrial OS=Pongo abelii GN=ATP5G3 PE=2 SV=1	9.0E-33	[1..142]	[1..142]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFACAKLACT PSLIRAGSRV AYRPISASVL SRPEASRTGE GSTVFNGAQN GVSQLIQREF  60
   61 QTSAISRDID TAAKFIGAGA ATVGVAGSGA GIGTVFGSLI IGYARNPSLK QQLFSYAILG 120
  121 FALSEAMGLF CLMVAFLILF AM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.154902
Match:	1yceA
Description:	Structure of the rotor ring of F-type Na+-ATPase from Ilyobacter tartaricus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits