YRC Public Data Repository - Protein Structure Prediction

Protein:	ASR_SHIFL
Organism:	Shigella flexneri
Length:	102 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ASR_SHIFL.

Description	E-value	Query Range	Subject Range
gi\|192927428, gi... - gi\|75257016\|ref\|ZP_00728576.1\| hypothetical protein EcolE2_01003066 [Escherichia coli E22], gi\|19306... gi\|194426120, gi... - gi\|75212934\|ref\|ZP_00712932.1\| hypothetical protein EcolB_01000316 [Escherichia coli B171], gi\|19442...	60.0	[0..1]	[90..10]
gi\|110805570, gi... - gi\|110805570\|ref\|YP_689090.1\| acid shock protein precursor [Shigella flexneri 5 str. 8401], gi\|11061... gi\|75190637, gi\|... - gi\|75190637\|ref\|ZP_00703904.1\| hypothetical protein EcolE_01003947 [Escherichia coli E24377A], gi\|15... gi\|192959653, gi... - gi\|75239760\|ref\|ZP_00723721.1\| hypothetical protein EcolE1_01000007 [Escherichia coli E110019], gi\|1... gi\|82776834, gi\|... - gi\|82776834\|ref\|YP_403183.1\| acid shock protein [Shigella dysenteriae Sd197], gi\|81240982\|gb\|ABB6169...	53.0	[0..1]	[90..10]
gi\|24112984, gi\|... - gi\|24112984\|ref\|NP_707494.1\| acid shock protein precursor [Shigella flexneri 2a str. 301], gi\|240519... gi\|30063111, gi\|... - gi\|30063111\|ref\|NP_837282.1\| acid shock protein precursor [Shigella flexneri 2a str. 2457T], gi\|3004...	53.0	[0..1]	[90..10]
gi\|190904034, gi... - gi\|75230954\|ref\|ZP_00717403.1\| hypothetical protein EcolB7_01000935 [Escherichia coli B7A], gi\|19116...	53.0	[0..1]	[90..10]
gi\|83587932, gi\|... - gi\|83587932\|ref\|ZP_00926558.1\| hypothetical protein Ecol1_01000965 [Escherichia coli 101-1], gi\|1944...	52.0	[0..1]	[90..10]
gi\|81245447, gi\|... - gi\|82544036\|ref\|YP_407983.1\| acid shock protein [Shigella boydii Sb227], gi\|81245447\|gb\|ABB66155.1\| ... gi\|75178508, gi\|... - gi\|75178508\|ref\|ZP_00698554.1\| hypothetical protein SboyB_01001428 [Shigella boydii BS512], gi\|18773...	47.0	[0..1]	[90..10]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKVLALVVA AAMGLSSAAF AAETATTPAP TATTTKAAPA KTTHHKKQHK AAPAQKAQAA  60
   61 KKHHKNTKAE QKAPEQKAQA AKKHAGKHGH QQPAKPAAQP AA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.443	a.39.2	Insect pheromon/odorant-binding proteins
View	Download	0.443	a.39.2	Insect pheromon/odorant-binding proteins
View	Download	0.443	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.287	d.92.1	Metalloproteases ("zincins"), catalytic domain
View	Download	0.271	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.260	a.39.2	Insect pheromon/odorant-binding proteins
View	Download	0.260	a.39.2	Insect pheromon/odorant-binding proteins
View	Download	0.253	a.5.4	Elongation factor TFIIS domain 2
View	Download	0.245	a.71.1	Endoplasmic reticulum protein ERP29, C-domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits