YRC Public Data Repository - Protein Structure Prediction

Protein:	ASTC_ECOLI, ARGM...
Organism:	Escherichia coli
Length:	406 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ASTC_ECOLI, ARGM....

Description	E-value	Query Range	Subject Range
ARGD_METJA - Acetylornithine aminotransferase OS=Methanocaldococcus jannaschii GN=argD PE=3 SV=1 ARGD_METJA - Acetylornithine aminotransferase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JA...	407.0	[0..1]	[400..1]
gi\|134298152, gi... - gi\|88944090\|ref\|ZP_01147423.1\| Acetylornithine and succinylornithine aminotransferase [Desulfotomacu...	405.0	[0..1]	[397..1]
gi\|110601528, gi... - gi\|222054221\|ref\|YP_002536583.1\| acetylornithine and succinylornithine aminotransferase [Geobacter s...	404.0	[0..1]	[400..1]
gi\|88917343, gi\|... - gi\|88935900\|ref\|ZP_01141523.1\| Acetylornithine and succinylornithine aminotransferase [Geobacter ura...	402.0	[0..1]	[400..1]
gi\|85859272, gi\|... - gi\|85859272\|ref\|YP_461474.1\| acetylornithine aminotransferase [Syntrophus aciditrophicus SB], gi\|857...	401.0	[0..1]	[399..1]
gi\|84488867, gi\|... - gi\|84488867\|ref\|YP_447099.1\| acetylornithine aminotransferase [Methanosphaera stadtmanae DSM 3091], ...	398.0	[0..1]	[397..1]
ARGD_THETN - Acetylornithine aminotransferase OS=Thermoanaerobacter tengcongensis GN=argD PE=3 SV=1 ARGD_CALS4 - Acetylornithine aminotransferase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 1...	398.0	[0..7]	[401..2]
gi\|118581574, gi... - gi\|71837414\|ref\|ZP_00677179.1\| Acetylornithine and succinylornithine aminotransferase [Pelobacter pr...	395.0	[0..1]	[402..1]
gi\|95135406, gi\|... - gi\|95928616\|ref\|ZP_01311363.1\| acetylornithine and succinylornithine aminotransferases [Desulfuromon...	395.0	[0..2]	[402..3]
gi\|116696578, gi... - gi\|71546438\|ref\|ZP_00667239.1\| Acetylornithine and succinylornithine aminotransferase [Syntrophobact...	390.0	[0..4]	[399..2]

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Predicted Domain #1

Region A:
Residues: [1-406]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQPITRENF DEWMIPVYAP APFIPVRGEG SRLWDQQGKE YIDFAGGIAV NALGHAHPEL  60
   61 REALNEQASK FWHTGNGYTN EPVLRLAKKL IDATFADRVF FCNSGAEANE AALKLARKFA 120
  121 HDRYGSHKSG IVAFKNAFHG RTLFTVSAGG QPAYSQDFAP LPADIRHAAY NDINSASALI 180
  181 DDSTCAVIVE PIQGEGGVVP ASNAFLQGLR ELCNRHNALL IFDEVQTGVG RTGELYAYMH 240
  241 YGVTPDLLTT AKALGGGFPV GALLATEECA RVMTVGTHGT TYGGNPLASA VAGKVLELIN 300
  301 TPEMLNGVKQ RHDWFVERLN TINHRYGLFS EVRGLGLLIG CVLNADYAGQ AKQISQEAAK 360
  361 AGVMVLIAGG NVVRFAPALN VSEEEVTTGL DRFAAACEHF VSRGSS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	105.0
Match:	2ordA
Description:	No description for 2ordA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits