YRC Public Data Repository - Protein Structure Prediction

Protein:	ARGD_SYNY3
Organism:	Synechocystis sp. PCC 6803
Length:	429 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARGD_SYNY3.

Description	E-value	Query Range	Subject Range
gi\|67856584, gi\|... - gi\|67921472\|ref\|ZP_00514990.1\| Acetylornithine and succinylornithine aminotransferase [Crocosphaera ...	374.0	[0..22]	[428..10]
gi\|186467502, gi... - gi\|23129254\|ref\|ZP_00111086.1\| COG4992: Ornithine/acetylornithine aminotransferase [Nostoc punctifor...	374.0	[0..12]	[425..10]
gi\|25287300 - pir\|\|AE1941 N-acetylornithine aminotransferase [imported] - Nostoc sp. (strain PCC 7120) ARGD_NOSS1 - Acetylornithine aminotransferase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=argD PE=3 SV=1 gi\|628914, gi\|580729 - gi\|628914\|pir\|\|S44189 N-acetylornithine aminotransferase - Anabaena sp, gi\|580729\|emb\|CAA55410.1\| N-...	373.0	[0..15]	[428..13]
ARGD_THETN - Acetylornithine aminotransferase OS=Thermoanaerobacter tengcongensis GN=argD PE=3 SV=1 ARGD_CALS4 - Acetylornithine aminotransferase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 1...	371.0	[0..31]	[428..5]
gi\|71671852, gi\|... - gi\|71674876\|ref\|ZP_00672622.1\| Acetylornithine and succinylornithine aminotransferase [Trichodesmium...	371.0	[0..23]	[429..17]
gi\|75703659, gi\|... - gi\|75909934\|ref\|YP_324230.1\| acetylornithine aminotransferase [Anabaena variabilis ATCC 29413], gi\|7...	371.0	[0..15]	[428..13]
ARGD_METJA - Acetylornithine aminotransferase OS=Methanocaldococcus jannaschii GN=argD PE=3 SV=1 ARGD_METJA - Acetylornithine aminotransferase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JA...	369.0	[0..27]	[428..6]
gi\|167039319, gi... - gi\|167039319\|ref\|YP_001662304.1\| acetylornithine and succinylornithine aminotransferase [Thermoanaer... gi\|242256153, gi... - gi\|242256153\|ref\|ZP_04801049.1\| acetylornithine and succinylornithine aminotransferase [Thermoanaero...	364.0	[0..30]	[428..5]
gi\|241883989, gi... - gi\|241903682\|ref\|ZP_04788402.1\| acetylornithine and succinylornithine aminotransferase [Thermoanaero... gi\|76588469, gi\|... - gi\|76796199\|ref\|ZP_00778566.1\| Acetylornithine and succinylornithine aminotransferase [Thermoanaerob...	363.0	[0..30]	[428..5]
ARGD_THEEB - Acetylornithine aminotransferase OS=Thermosynechococcus elongatus (strain BP-1) GN=argD PE=3 SV=1 ARGD_SYNEL - Acetylornithine aminotransferase OS=Synechococcus elongatus GN=argD PE=3 SV=1	360.0	[0..21]	[428..4]

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Predicted Domain #1

Region A:
Residues: [1-429]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYSPVVESV EAQAFAVTDL SPAAEFKTAD FDTYVMNTYG RFPIAIARGQ GSTLWDTEGK  60
   61 SYLDFVAGIA TCTLGHAHPA LVRAVSDQIQ KLHHVSNLYY IPEQGELAKW IVEHSCADRV 120
  121 FFCNSGAEAN EAAIKLVRKY AHTVLDFLEQ PVILTAKASF HGRTLATITA TGQPKYQQYF 180
  181 DPLVPGFDYV PYNDIRSLEN KVADLDEGNS RVAAIFLEPL QGEGGVRPGD LAYFKRVREI 240
  241 CDQNDILLVF DEVQVGVGRT GKLWGYEHLG VEPDIFTSAK GLAGGVPIGA MMCKKFCDVF 300
  301 EPGNHASTFG GNPLACAAGL AVLKTIEGDR LLDNVQARGE QLRSGLAEIK NQYPTLFTEV 360
  361 RGWGLINGLE ISAESSLTSV EIVKAAMEQG LLLAPAGPKV LRFVPPLVVT EAEIAQAVEI 420
  421 LRQAIATLV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	96.154902
Match:	2e54A
Description:	No description for 2e54A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits