YRC Public Data Repository - Protein Structure Prediction

Protein:	ARGA_ECOLI
Organism:	Escherichia coli
Length:	443 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARGA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|3128253 - gi\|3128253\|gb\|AAC23446.1\| N-acetylglutamate synthetase [Escherichia coli]	318.0	[0..1]	[443..1]
gi\|110616303, gi... - gi\|110806755\|ref\|YP_690275.1\| N-acetylglutamate synthase [Shigella flexneri 5 str. 8401], gi\|1106163...	317.0	[0..1]	[443..1]
gi\|73856863, gi\|... - gi\|74313386\|ref\|YP_311805.1\| N-acetylglutamate synthase [Shigella sonnei Ss046], gi\|73856863\|gb\|AAZ8...	317.0	[0..1]	[443..1]
gi\|110642985, gi... - gi\|110642985\|ref\|YP_670715.1\| N-acetylglutamate synthase [Escherichia coli 536], gi\|110344577\|gb\|ABG... gi\|190908521, gi... - gi\|75241773\|ref\|ZP_00725592.1\| COG0548: Acetylglutamate kinase [Escherichia coli F11], gi\|191171221\|...	317.0	[0..1]	[443..1]
gi\|83569188, gi\|... - gi\|83569188\|ref\|ZP_00920646.1\| COG0548: Acetylglutamate kinase [Shigella dysenteriae 1012], gi\|19443...	317.0	[0..1]	[443..1]
gi\|194415678, gi... - gi\|75212549\|ref\|ZP_00712573.1\| COG0548: Acetylglutamate kinase [Escherichia coli B171], gi\|194426370...	317.0	[0..1]	[443..1]
gi\|56383739, gi\|... - gi\|56480188\|ref\|NP_708609.2\| N-acetylglutamate synthase [Shigella flexneri 2a str. 301], gi\|56383739... gi\|30064160, gi\|... - gi\|30064160\|ref\|NP_838331.1\| N-acetylglutamate synthase [Shigella flexneri 2a str. 2457T], gi\|300424... ARGA_SHIFL - Amino-acid acetyltransferase OS=Shigella flexneri GN=argA PE=3 SV=1	317.0	[0..1]	[443..1]
gi\|82778194, gi\|... - gi\|82778194\|ref\|YP_404543.1\| N-acetylglutamate synthase [Shigella dysenteriae Sd197], gi\|81242342\|gb...	316.0	[0..1]	[443..1]

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Predicted Domain #1

Region A:
Residues: [1-300]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKERKTELV EGFRHSVPYI NTHRGKTFVI MLGGEAIEHE NFSSIVNDIG LLHSLGIRLV  60
   61 VVYGARPQID ANLAAHHHEP LYHKNIRVTD AKTLELVKQA AGTLQLDITA RLSMSLNNTP 120
  121 LQGAHINVVS GNFIIAQPLG VDDGVDYCHS GRIRRIDEDA IHRQLDSGAI VLMGPVAVSV 180
  181 TGESFNLTSE EIATQLAIKL KAEKMIGFCS SQGVTNDDGD IVSELFPNEA QARVEAQEEK 240
  241 GDYNSGTVRF LRGAVKACRS GVRRCHLISY QEDGALLQEL FSRDGIGTQI VMESAEQIRR 300
  301

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.522879
Match:	2jj4A
Description:	No description for 2jj4A was found.

Predicted Domain #2

Region A:
Residues: [301-443]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATINDIGGIL ELIRPLEQQG ILVRRSREQL EMEIDKFTII QRDNTTIACA ALYPFPEEKI  60
   61 GEMACVAVHP DYRSSSRGEV LLERIAAQAK QSGLSKLFVL TTRSIHWFQE RGFTPVDIDL 120
  121 LPESKKQLYN YQRKSKVLMA DLG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.30103
Match:	2q7bA
Description:	No description for 2q7bA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits