| Protein: | ARFL_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 593 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARFL_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
710.0 | [0..1] | [593..1] |
|
Region A: Residues: [1-102] |
1 11 21 31 41 51
| | | | | |
1 MESGNVVNAQ PELSGIIDGS KSYVYEQLWK LCAGPLCDIP KLGEKVYYFP QGHIELVETS 60
61 TREELNELQP ICDLPSKLQC RVIAIHLKVE NNSDETYAEI TL
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.411 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.231 | N/A | N/A | a.55.1 | IHF-like DNA-binding proteins |
| View | Download | 0.231 | N/A | N/A | a.55.1 | IHF-like DNA-binding proteins |
|
Region A: Residues: [103-244] |
1 11 21 31 41 51
| | | | | |
1 MPDTTQVVIP TQNENQFRPL VNSFTKVLTA SDTSAHGGFF VPKKHAIECL PSLDMSQPLP 60
61 AQELLAIDLH GNQWRFNHNY RGTPQRHLLT TGWNAFTTSK KLVAGDVIVF VRGETGELRV 120
121 GIRRARHQQG NIPSSIVSID CM
|
| Detection Method: | |
| Confidence: | 34.69897 |
| Match: | 1widA |
| Description: | Solution Structure of the B3 DNA-Binding Domain of RAV1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [245-339] |
1 11 21 31 41 51
| | | | | |
1 RHGVVASAKH AFDNQCMFTV VYKPRSSKFI VSYDKFLDAV NNKFNVGSRF TMRLEGDDFS 60
61 ERRCFGTIIG VSDFSPHWKC SEWRSLEVQW DEFTS
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.828 | N/A | N/A | b.53.1 | Ribosomal protein L25-like |
| View | Download | 0.741 | N/A | N/A | b.53.1 | Ribosomal protein L25-like |
| View | Download | 0.606 | N/A | N/A | d.110.3 | PYP-like sensor domain (PAS domain) |
| View | Download | 0.606 | N/A | N/A | d.110.3 | PYP-like sensor domain (PAS domain) |
| View | Download | 0.589 | N/A | N/A | d.110.3 | PYP-like sensor domain (PAS domain) |
| View | Download | 0.484 | N/A | N/A | b.53.1 | Ribosomal protein L25-like |
| View | Download | 0.462 | N/A | N/A | b.71.1 | Glycosyl hydrolase domain |
| View | Download | 0.405 | N/A | N/A | d.110.3 | PYP-like sensor domain (PAS domain) |
| View | Download | 0.395 | N/A | N/A | c.52.1 | Restriction endonuclease-like |
| View | Download | 0.363 | N/A | N/A | b.50.1 | Acid proteases |
|
Region A: Residues: [340-460] |
1 11 21 31 41 51
| | | | | |
1 FPGPKKVSPW DIEHLMPAIN VPRSFLLKNK RLREVNEIGS SSSHLLPPIL TQGQENEQLS 60
61 VASPMNISLR YRDATEDAMN PSKLLMSYPV QPMPKLNYNN QMVTEMEENI TTKTGTNFRL 120
121 F
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.388 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.356 | N/A | N/A | a.71.2 | Helical domain of Sec23/24 |
| View | Download | 0.322 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.315 | N/A | N/A | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.307 | N/A | N/A | d.82.2 | Frataxin-like |
| View | Download | 0.229 | N/A | N/A | d.56.1 | GroEL-intermediate domain like |
|
Region A: Residues: [461-593] |
1 11 21 31 41 51
| | | | | |
1 GVTLDTPPVI KDPIEEIGSE ISKLTEGKKF GLSQTLRSPT EIQNKQFSSS RTCTKVQMQG 60
61 VTIGRAVDLS VLNGYDQLIL ELEKLFDIKG QLQTRNQWEI AFTDSDEDKM LVGDDPWPEF 120
121 CNMVKKIFIQ KRR
|
| Detection Method: | |
| Confidence: | 1.24 |
| Match: | 1ip9A |
| Description: | Bud emergence mediator Bemp1 |
Matching Structure (courtesy of the PDB): |
|
