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View Structure Prediction Details

Protein: APEL_BOVIN
Organism: Bos taurus
Length: 77 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APEL_BOVIN.

Description E-value Query
Range
Subject
Range
gi|74008940 - gi|74008940|ref|XP_854262.1| PREDICTED: similar to Apelin precursor (APJ endogenous ligand) [Canis f...
118.0 [0..1] [77..181]
APLN - apelin
99.0 [0..1] [77..1]
gi|114690127 - gi|114690127|ref|XP_001144812.1| PREDICTED: hypothetical protein [Pan troglodytes]
97.0 [0..1] [71..83]
APEL_RAT - Apelin OS=Rattus norvegicus GN=Apln PE=1 SV=1
96.0 [0..1] [77..1]
APEL_MOUSE - Apelin OS=Mus musculus GN=Apln PE=3 SV=1
92.0 [0..1] [77..1]
gi|47226217 - gi|47226217|emb|CAG08364.1| unnamed protein product [Tetraodon nigroviridis]
87.0 [0..15] [77..1]

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Predicted Domain #1
Region A:
Residues: [1-77]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLRRCVQAL LLLWLCLSAV CGGPLLQTSD GKEMEEGTIR YLVQPRGPRS GPGPWQGGRR  60
   61 KFRRQRPRLS HKGPMPF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.572 d.68.3 SirA-like
View Download 0.478 d.68.6 DNA-binding protein Sso10b (AlbA)
View Download 0.455 a.77.1 DEATH domain
View Download 0.299 d.68.6 DNA-binding protein Sso10b (AlbA)
View Download 0.296 a.77.1 DEATH domain
View Download 0.296 a.77.1 DEATH domain
View Download 0.275 a.77.1 DEATH domain
View Download 0.247 a.179.1 Replisome organizer (g39p helicase loader/inhibitor protein)


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle