YRC Public Data Repository - Protein Structure Prediction

Protein:	APOA2_MACFA
Organism:	Macaca fascicularis
Length:	100 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APOA2_MACFA.

Description	E-value	Query Range	Subject Range
gi\|74006267 - gi\|74006267\|ref\|XP_536139.2\| PREDICTED: similar to Apolipoprotein A-II precursor (Apo-AII) (ApoA-II)...	175.0	[0..1]	[100..101]
APOA2_MOUSE - Apolipoprotein A-II OS=Mus musculus GN=Apoa2 PE=1 SV=2	165.0	[0..1]	[98..1]
APOA2_RAT - Apolipoprotein A-II OS=Rattus norvegicus GN=Apoa2 PE=2 SV=1	163.0	[0..1]	[98..1]
gi\|671882 - gi\|671882\|emb\|CAA28583.1\| apolipoprotein [Homo sapiens]	159.0	[0..1]	[100..1]
APOA2_PANPA - Apolipoprotein A-II OS=Pan paniscus GN=APOA2 PE=1 SV=1 APOA2_PANTR - Apolipoprotein A-II OS=Pan troglodytes GN=APOA2 PE=1 SV=1	158.0	[0..1]	[100..1]
gi\|30583799, gi\|... - gi\|60653525\|gb\|AAX29456.1\| apolipoprotein A-II [synthetic construct], gi\|60653523\|gb\|AAX29455.1\| apo...	157.0	[0..1]	[100..1]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLAATVLL LTICSLEGAL VRRQAEEPSV ESLVSQYFQT VTDYGKDLME KVKSPELQAQ  60
   61 AKAYFEKSKE QLTPLVKKAG TDLVNFLSYF VELRTQPATQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.39794
Match:	1l6lA
Description:	Apolipoprotein A-II
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits