YRC Public Data Repository - Protein Structure Prediction

Protein:	ANFD_LITCT
Organism:	Rana catesbeiana
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ANFD_LITCT.

Description	E-value	Query Range	Subject Range
gi\|90652774 - gi\|90652774\|dbj\|BAE92277.1\| C-type natriuretic peptide 4 [Polypterus endlicheri]	121.0	[0..1]	[118..1]
ANFC4_ORYLA - C-type natriuretic peptide 4 OS=Oryzias latipes GN=cnp-4 PE=2 SV=1	117.0	[0..1]	[118..1]
ANFC4_TAKRU - C-type natriuretic peptide 4 OS=Takifugu rubripes GN=cnp-4 PE=2 SV=1	111.0	[0..1]	[118..1]
ANF_RAT - Natriuretic peptides A OS=Rattus norvegicus GN=Nppa PE=1 SV=1	110.0	[0..8]	[118..10]
gi\|68438345 - gi\|68438345\|ref\|XP_698794.1\| PREDICTED: similar to C-type natriuretic peptide-4 [Danio rerio]	108.0	[0..16]	[118..634]
gi\|18254389 - gi\|18254389\|gb\|AAL66741.1\|AF460238_1 atrial natriuretic peptide hormone [Notomys alexis]	108.0	[0..4]	[118..6]
gi\|108246 - pir\|\|S13107 atrial natriuretic peptide precursor - pig ANF_PIG - Natriuretic peptides A OS=Sus scrofa GN=NPPA PE=1 SV=1	107.0	[0..4]	[118..6]
ANF_FELCA - Natriuretic peptides A OS=Felis catus GN=NPPA PE=3 SV=1	106.0	[0..4]	[118..7]
ANF_MOUSE - Natriuretic peptides A OS=Mus musculus GN=Nppa PE=1 SV=2	106.0	[0..4]	[118..6]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHFCHIVGWG LVLAVLYLRT EAKPVAQAHQ KSLRALLGEE LAEYLVSGER GERSIDPKTR  60
   61 ARLLRDIRAD TRSRAAWTRL LNEHPNSRKI KGINKKGTSK GCFGLKLDRI GAMSGLGC

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	30.318759
Match:	PF00212.9
Description:	No description for PF00212.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits