YRC Public Data Repository - Protein Structure Prediction

Protein:	ANFC_TRISC
Organism:	Triakis scyllium
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ANFC_TRISC.

Description	E-value	Query Range	Subject Range
ANFC_SQUAC - C-type natriuretic peptide OS=Squalus acanthias PE=2 SV=1	131.0	[0..1]	[136..1]
gi\|262799 - gi\|262799\|gb\|AAB24763.1\| C-type natriuretic peptide, CNP [Triakis scyllia, Peptide, 115 aa]	125.0	[0..22]	[136..1]
ANFC_SCYCA - C-type natriuretic peptide prohormone OS=Scyliorhinus canicula PE=1 SV=1	122.0	[0..22]	[136..1]
gi\|85677455 - gi\|85677455\|dbj\|BAE78505.1\| C-type natriuretic peptide precursor [Dasyatis akajei]	121.0	[0..1]	[136..1]
gi\|85677461 - gi\|85677461\|dbj\|BAE78508.1\| C-type natriuretic peptide precursor [Trygonorrhina fasciata]	121.0	[0..1]	[136..1]
gi\|85677459 - gi\|85677459\|dbj\|BAE78507.1\| C-type natriuretic peptide precursor [Rhinobatos typus] gi\|85677457 - gi\|85677457\|dbj\|BAE78506.1\| C-type natriuretic peptide precursor [Pristis microdon]	121.0	[0..1]	[136..1]
gi\|84871652 - gi\|84871652\|dbj\|BAE75880.1\| C-type natriuretic peptide precursor [Callorhinchus milii]	116.0	[0..1]	[136..1]
ANFC_LITCT - C-type natriuretic peptide 1 OS=Lithobates catesbeiana PE=1 SV=2	113.0	[0..1]	[136..1]
gi\|72496473 - gi\|72496473\|dbj\|BAE19666.1\| atrial natriuretic peptide [Plecoglossus altivelis]	113.0	[0..2]	[136..1]
gi\|18254389 - gi\|18254389\|gb\|AAL66741.1\|AF460238_1 atrial natriuretic peptide hormone [Notomys alexis]	112.0	[0..2]	[136..1]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGQTSFYCG LLLVLLIQAQ ARPRSDDSLQ TLSRLLEDEY GHYLPSDELN NEAQEMSPAA  60
   61 SLPEFNADQS DLELPWDRES REIGGRPFRQ EAVLARLLKD LSNNPLRFRG RSKKGPSRGC 120
  121 FGVKLDRIGA MSGLGC

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	41.920819
Match:	PF00212.9
Description:	No description for PF00212.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits