YRC Public Data Repository - Protein Structure Prediction

Protein:	ANFC_SQUAC
Organism:	Squalus acanthias
Length:	135 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ANFC_SQUAC.

Description	E-value	Query Range	Subject Range
ANFC_TRISC - C-type natriuretic peptide prohormone OS=Triakis scyllium PE=1 SV=2	140.0	[0..1]	[135..1]
gi\|18254389 - gi\|18254389\|gb\|AAL66741.1\|AF460238_1 atrial natriuretic peptide hormone [Notomys alexis]	113.0	[0..2]	[135..1]
ANFC_SCYCA - C-type natriuretic peptide prohormone OS=Scyliorhinus canicula PE=1 SV=1	113.0	[0..22]	[135..1]
ANF_RAT - Natriuretic peptides A OS=Rattus norvegicus GN=Nppa PE=1 SV=1	113.0	[0..2]	[135..1]
gi\|85677455 - gi\|85677455\|dbj\|BAE78505.1\| C-type natriuretic peptide precursor [Dasyatis akajei]	113.0	[0..1]	[135..1]
gi\|90652772 - gi\|90652772\|dbj\|BAE92276.1\| C-type natriuretic peptide 3 [Polypterus endlicheri]	112.0	[0..1]	[135..1]
gi\|84871652 - gi\|84871652\|dbj\|BAE75880.1\| C-type natriuretic peptide precursor [Callorhinchus milii]	112.0	[0..1]	[135..1]
gi\|85677459 - gi\|85677459\|dbj\|BAE78507.1\| C-type natriuretic peptide precursor [Rhinobatos typus] gi\|85677457 - gi\|85677457\|dbj\|BAE78506.1\| C-type natriuretic peptide precursor [Pristis microdon]	111.0	[0..1]	[135..1]

Back

Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGHTSFYCG LLLLLLIQVQ ARPRADDSLQ VLSRLLEDEY GHFNSEELNN EAQEISPAAS  60
   61 LPDLNTDQSD LELPWDRESR EIGGRSFRQE ALLARLLQDL SNNPLRFKGR SKKGPSRSCF 120
  121 GLKLDRIGAM SGLGC

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	34.29243
Match:	PF00212.9
Description:	No description for PF00212.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits