YRC Public Data Repository - Protein Structure Prediction

Protein:	ANFC_SCYCA
Organism:	Scyliorhinus canicula
Length:	115 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ANFC_SCYCA.

Description	E-value	Query Range	Subject Range
ANFC_TRISC - C-type natriuretic peptide prohormone OS=Triakis scyllium PE=1 SV=2	130.0	[0..1]	[115..22]
ANFC_SQUAC - C-type natriuretic peptide OS=Squalus acanthias PE=2 SV=1	121.0	[0..1]	[115..22]
gi\|85677455 - gi\|85677455\|dbj\|BAE78505.1\| C-type natriuretic peptide precursor [Dasyatis akajei]	118.0	[0..1]	[115..22]
gi\|85677459 - gi\|85677459\|dbj\|BAE78507.1\| C-type natriuretic peptide precursor [Rhinobatos typus] gi\|85677457 - gi\|85677457\|dbj\|BAE78506.1\| C-type natriuretic peptide precursor [Pristis microdon]	116.0	[0..1]	[115..22]
gi\|85677461 - gi\|85677461\|dbj\|BAE78508.1\| C-type natriuretic peptide precursor [Trygonorrhina fasciata]	115.0	[0..1]	[115..22]
gi\|84871652 - gi\|84871652\|dbj\|BAE75880.1\| C-type natriuretic peptide precursor [Callorhinchus milii]	103.0	[0..1]	[115..24]
gi\|18254389 - gi\|18254389\|gb\|AAL66741.1\|AF460238_1 atrial natriuretic peptide hormone [Notomys alexis]	101.0	[0..3]	[115..31]
gi\|108246 - pir\|\|S13107 atrial natriuretic peptide precursor - pig ANF_PIG - Natriuretic peptides A OS=Sus scrofa GN=NPPA PE=1 SV=1	101.0	[0..3]	[115..31]
ANF_FELCA - Natriuretic peptides A OS=Felis catus GN=NPPA PE=3 SV=1	101.0	[0..3]	[115..32]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RPRSDDSLQT LSRLLEDEYG HYLPSDELNN EAEEMSPAAS LPELNADQSD LELPWERESR  60
   61 EIGGRPFRQE AVLARLLKDL SNNPLRFRGR SKKGPSRGCF GVKLDRIGAM SGLGC

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	42.744727
Match:	PF00212.9
Description:	No description for PF00212.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits