YRC Public Data Repository - Protein Structure Prediction

Protein:	ANFC_LITCT
Organism:	Rana catesbeiana
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ANFC_LITCT.

Description	E-value	Query Range	Subject Range
ANFC_TRISC - C-type natriuretic peptide prohormone OS=Triakis scyllium PE=1 SV=2	118.0	[0..1]	[129..1]
gi\|108246 - pir\|\|S13107 atrial natriuretic peptide precursor - pig ANF_PIG - Natriuretic peptides A OS=Sus scrofa GN=NPPA PE=1 SV=1	117.0	[0..1]	[129..1]
ANF_FELCA - Natriuretic peptides A OS=Felis catus GN=NPPA PE=3 SV=1	116.0	[0..2]	[129..3]
gi\|18254389 - gi\|18254389\|gb\|AAL66741.1\|AF460238_1 atrial natriuretic peptide hormone [Notomys alexis]	116.0	[0..1]	[129..1]
gi\|6687599, gi\|6... - gi\|6687599\|emb\|CAB65023.1\| atrial natriuretic peptide [Balaenoptera physalus], gi\|6686952\|emb\|CAB647...	115.0	[0..1]	[129..1]
ANF_RAT - Natriuretic peptides A OS=Rattus norvegicus GN=Nppa PE=1 SV=1	115.0	[0..1]	[129..1]
gi\|47847117 - gi\|47847117\|dbj\|BAD21299.1\| atrial natriuretic peptide [Camelus dromedarius]	114.0	[0..1]	[129..1]
gi\|108997197 - gi\|108997197\|ref\|XP_001105465.1\| PREDICTED: natriuretic peptide precursor A [Macaca mulatta]	113.0	[0..2]	[129..3]
ANF_MOUSE - Natriuretic peptides A OS=Mus musculus GN=Nppa PE=1 SV=2	113.0	[0..1]	[129..1]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYKRGTCLG FIMLLMVSHH HTKGKPLSSL QNLSRLLEDN FERSFGSDEA DQQLVPTDSL  60
   61 DQLDPELQWN KNRLEQGDSP HVNEMTLQQL LNDPVGTSRR YRQRNKKGYS RGCFGVKLDR 120
  121 IGAFSGLGC

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	36.568636
Match:	PF00212.9
Description:	No description for PF00212.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits